JPsnpHou00115, JPsnpHou00115 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00115
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TGACAAAGCTGTCACTACTTTAAACAATGAGGGGGATTGGAGAAATGGCATGCGGGTGAA GCTTCTAAAGCAAGTGGGAAAGTATGGACAGAGAAAACAACCCTGGAGGGGTTTTGATTC TGAGAAGAGTAGCGGCAACAGAAGTAACGATCAAACAGGAGACGAGGAGAATCATACTGT AAGTGAGAAACATAATGATGCACGGACAACTGATGAAGAGGACGGAGAGCGAGTTCCCAA AGAGAAAACTGGGCATAGAGGTCGAAATAGGGGGCAACCAGGAAGGCAAAAATACCGTGG GACCAATGGATTTGGTCATGGAACTACATCGGCCAATCACGGCATTGAACCTTCAAAGCC
3' Flanking Sequence	CCACCCGGCCCAAGGATGCCTGATGGAACCAGGGGATTCACAATGGGGCGAGGGCGGACT CCGAGCACCGCCCAGACCTAGCAAGTGGTTTGATCACCAGATCTATAGTGTTTTTGTGTT TCATAACGTTTCTGTATGTATTGCACCGAGATCTGGTAGAACCGTGGTGTGTGTGTACTC ATGCCGGCGGACTTGTGTGAATATGCATCTATCAACCGTAATCCGAATTTATTTATGTTG AACTTTTGTTGGGTTTGTGAATCAATACTAGTGTTAAACCCCAGGTGGGCACTGGTAAAA AAAAAAAAAAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 361

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	163.2	JPsnpHou00115	View

Sequence

>JPsnpHou00115 ID=JPsnpHou00115; Name=JPsnpHou00115; organism=Pyrus pyrifolia; type=genetic_marker; length=673bp
TGACAAAGCTGTCACTACTTTAAACAATGAGGGGGATTGGAGAAATGGCA
TGCGGGTGAAGCTTCTAAAGCAAGTGGGAAAGTATGGACAGAGAAAACAA
CCCTGGAGGGGTTTTGATTCTGAGAAGAGTAGCGGCAACAGAAGTAACGA
TCAAACAGGAGACGAGGAGAATCATACTGTAAGTGAGAAACATAATGATG
CACGGACAACTGATGAAGAGGACGGAGAGCGAGTTCCCAAAGAGAAAACT
GGGCATAGAGGTCGAAATAGGGGGCAACCAGGAAGGCAAAAATACCGTGG
GACCAATGGATTTGGTCATGGAACTACATCGGCCAATCACGGCATTGAAC
CTTCAAAGCCrCCACCCGGCCCAAGGATGCCTGATGGAACCAGGGGATTC
ACAATGGGGCGAGGGCGGACTCCGAGCACCGCCCAGACCTAGCAAGTGGT
TTGATCACCAGATCTATAGTGTTTTTGTGTTTCATAACGTTTCTGTATGT
ATTGCACCGAGATCTGGTAGAACCGTGGTGTGTGTGTACTCATGCCGGCG
GACTTGTGTGAATATGCATCTATCAACCGTAATCCGAATTTATTTATGTT
GAACTTTTGTTGGGTTTGTGAATCAATACTAGTGTTAAACCCCAGGTGGG
CACTGGTAAAAAAAAAAAAAAAC