JPsnpHou00460, JPsnpHou00460 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00460
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGGTCTTGAAGGGGTTTGGTACAAGTGCATAAGATGTTTGCGGCAGACGTCAGCTTTTG CTTCCCCAGATGCTGCTACTGCAGCGAATCAAACTGGGCGGGAGACTTGGTGGATCAGCC GCTGGGCTTATTGCTGTCCTATGTGTGGCGGAACATGGGTTCGAGTTGTATAGGTGACTG AACTGACTGTATTATTTATTAGATTGGACATATACAGTACAAGCGTTCTTTAAGGCAGTC AGTTTAGAAGATTACCTTGGTTGTAAATCATCTTCACCGGCCACCTCCGTGGATCCATTT GACCTGGAGTGAGAACATTACATTTGATACGCATATATAAACGTTAATAGCTGCCGCCGG
3' Flanking Sequence	GAACGCCGTTGAGATGGTAGCCTCGGCAAATGTCTCTCGTGGATCCACTTGCTTTATCnG GTTGCTAGATTTGTAGTTTTAACACTGGAGTTGCACGAACTTTGCCGTTCTTCTGGGCGT GGGGTTGTGAAGGCAGGTGGTTGGTAGGGTTCCTGTATTCTATGTTGTAAACATTTTTGA AGCAAATCAATACAAACATATTCACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 361

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	202.21	JPsnpHou00460	View

Sequence

>JPsnpHou00460 ID=JPsnpHou00460; Name=JPsnpHou00460; organism=Pyrus pyrifolia; type=genetic_marker; length=567bp
CTGGTCTTGAAGGGGTTTGGTACAAGTGCATAAGATGTTTGCGGCAGACG
TCAGCTTTTGCTTCCCCAGATGCTGCTACTGCAGCGAATCAAACTGGGCG
GGAGACTTGGTGGATCAGCCGCTGGGCTTATTGCTGTCCTATGTGTGGCG
GAACATGGGTTCGAGTTGTATAGGTGACTGAACTGACTGTATTATTTATT
AGATTGGACATATACAGTACAAGCGTTCTTTAAGGCAGTCAGTTTAGAAG
ATTACCTTGGTTGTAAATCATCTTCACCGGCCACCTCCGTGGATCCATTT
GACCTGGAGTGAGAACATTACATTTGATACGCATATATAAACGTTAATAG
CTGCCGCCGGrGAACGCCGTTGAGATGGTAGCCTCGGCAAATGTCTCTCG
TGGATCCACTTGCTTTATCnGGTTGCTAGATTTGTAGTTTTAACACTGGA
GTTGCACGAACTTTGCCGTTCTTCTGGGCGTGGGGTTGTGAAGGCAGGTG
GTTGGTAGGGTTCCTGTATTCTATGTTGTAAACATTTTTGAAGCAAATCA
ATACAAACATATTCACT