JPsnpHou00047, JPsnpHou00047 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00047
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GATTTACAAGGGCGAATTCCGGTGCCCGAAATGGATGTCGGCGGATCTGAAGCGGTTTTT GGGTCGGCTGATGGATACCAACCCGGCGACCCGGATTACGATCGACGAGATTTTGAAGGA CCCGTGGTTCAGAAAAGGCGGGTGCAAGGAGATCAAATTCTACGACGACGATTGTTCGAT GGACGACGCCAAAATCGGCGGCGAGGAGGAGCAGAAGGGCGTGACGAGCCTGAACGCGTT CGATTTGATTTCGTTCTCGGCCGGGTTGGACCTGTCCGGGTTGTTCGAGTCGTCGAGCAG CAGCCCTGCGGAGGACGGCGAGCGCTTTATATCGGAGGAGACGGTGGAGAAGGTGATGG
3' Flanking Sequence	GAGAGTGGCCGAGTTTGCCAAGGCGGAGAAGTTGAGGGTGAGGAGGAAGAAGGATTGGGG ACTGGAGATGGAAGGGCAGAATGGAAATTTATCAATTGCTGTGGAGGTTTACAGATTGAC GGATAATCTGGTGGTGGTGGAGGCCAAGAGGACGGGCGGAGACGCCGCGCCGTTCAAGGA GATGTGGAAGAACAAGCTCAGGCCTTANCTGATTTGCCCAAATGATCAAAGCAATCTCAT CGTCCATATCAAACTCCGTCGTCTTCTTCCTCCTTCGCTCCCTTGCCCAGTCAACGAATG TTAGAATCGTGGGTGTCGAACGACAGGTCG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 360

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	110.14	JPsnpHou00047	View

Sequence

>JPsnpHou00047 ID=JPsnpHou00047; Name=JPsnpHou00047; organism=Pyrus pyrifolia; type=genetic_marker; length=690bp
GATTTACAAGGGCGAATTCCGGTGCCCGAAATGGATGTCGGCGGATCTGA
AGCGGTTTTTGGGTCGGCTGATGGATACCAACCCGGCGACCCGGATTACG
ATCGACGAGATTTTGAAGGACCCGTGGTTCAGAAAAGGCGGGTGCAAGGA
GATCAAATTCTACGACGACGATTGTTCGATGGACGACGCCAAAATCGGCG
GCGAGGAGGAGCAGAAGGGCGTGACGAGCCTGAACGCGTTCGATTTGATT
TCGTTCTCGGCCGGGTTGGACCTGTCCGGGTTGTTCGAGTCGTCGAGCAG
CAGCCCTGCGGAGGACGGCGAGCGCTTTATATCGGAGGAGACGGTGGAGA
AGGTGATGGrGAGAGTGGCCGAGTTTGCCAAGGCGGAGAAGTTGAGGGTG
AGGAGGAAGAAGGATTGGGGACTGGAGATGGAAGGGCAGAATGGAAATTT
ATCAATTGCTGTGGAGGTTTACAGATTGACGGATAATCTGGTGGTGGTGG
AGGCCAAGAGGACGGGCGGAGACGCCGCGCCGTTCAAGGAGATGTGGAAG
AACAAGCTCAGGCCTTANCTGATTTGCCCAAATGATCAAAGCAATCTCAT
CGTCCATATCAAACTCCGTCGTCTTCTTCCTCCTTCGCTCCCTTGCCCAG
TCAACGAATGTTAGAATCGTGGGTGTCGAACGACAGGTCG