JPsnpHou00612, JPsnpHou00612 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00612
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTCGGTTAGGGTTGCGGGGAAGCCGTTGAATTTGAATTACATTCACATGAGGGGAGACAA CCGGACGATTCTTGACGGAACCCTGGTGCTCGATTCGGCCAACAAGGTGTCGGCCAATCA CGTGCTCGGCTCGAGGAACGGGAAGTTCAAGTACTCTTATCTGCACGGCGGAGCGACGAC GTTTGAGCCGTCTTACGACTTGGCCAAGGAATCGTGGGATTTCGCGGTGTCCCGGAGGTT TTATGATGATGTGTTCAGGGCTTCGTACCAGACCTCGAGCAAGCTGTTGGGGTTGGAGTG GTCGAGGAGTTCTAAAATCAATGGAACTTTTAAGGTTTCAGCGTCTGTCAATTTGGCTG
3' Flanking Sequence	GGAACGAAAGATGCCAAGGTTAACAGCCGAGAGTACGTGGGATATTGATATGTGAATCnT TATTGTTATAAACGACGTAGAATTGTCTCACGACGGCTTTAAACATCGTTGATAAAAATT CATGATATCTTGTTACGGGTAGCCTCGACTATCTTCTTGAAAATTTAAGTTGTTTATCTT CGACGGTCTGAGTAACGAAAATCATCATTTGTTTCGTGAAATGATTTTCTCTTGGAGGAA CTTGGGCCTGTTTACGGCTAATTTATACTGAAAATACACATCTTTGATTTGCTTGAAAAA AAAAAAAACCGAAGACTAGCCAAGGACACACAGGGGAGTAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 360

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	41.35	JPsnpHou00612	View

Sequence

>JPsnpHou00612 ID=JPsnpHou00612; Name=JPsnpHou00612; organism=Pyrus pyrifolia; type=genetic_marker; length=702bp
CTCGGTTAGGGTTGCGGGGAAGCCGTTGAATTTGAATTACATTCACATGA
GGGGAGACAACCGGACGATTCTTGACGGAACCCTGGTGCTCGATTCGGCC
AACAAGGTGTCGGCCAATCACGTGCTCGGCTCGAGGAACGGGAAGTTCAA
GTACTCTTATCTGCACGGCGGAGCGACGACGTTTGAGCCGTCTTACGACT
TGGCCAAGGAATCGTGGGATTTCGCGGTGTCCCGGAGGTTTTATGATGAT
GTGTTCAGGGCTTCGTACCAGACCTCGAGCAAGCTGTTGGGGTTGGAGTG
GTCGAGGAGTTCTAAAATCAATGGAACTTTTAAGGTTTCAGCGTCTGTCA
ATTTGGCTGrGGAACGAAAGATGCCAAGGTTAACAGCCGAGAGTACGTGG
GATATTGATATGTGAATCnTTATTGTTATAAACGACGTAGAATTGTCTCA
CGACGGCTTTAAACATCGTTGATAAAAATTCATGATATCTTGTTACGGGT
AGCCTCGACTATCTTCTTGAAAATTTAAGTTGTTTATCTTCGACGGTCTG
AGTAACGAAAATCATCATTTGTTTCGTGAAATGATTTTCTCTTGGAGGAA
CTTGGGCCTGTTTACGGCTAATTTATACTGAAAATACACATCTTTGATTT
GCTTGAAAAAAAAAAAAACCGAAGACTAGCCAAGGACACACAGGGGAGTA
GG