JPsnpHou00436, JPsnpHou00436 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00436
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	ATCAACTACGACATGCCAGATTCTGCTGACACTTACTTACACAGGGTTGGCAGAGCTGGT AGGTTTGGCACCAAAGGTCTTGCTATTACGTTTGTTTCATCCGCAGCAGACTCTGATGTT CTAAATGATGTTCAGGAGAGGTTTGAGGTTGACATAAAGGAGCTTCCTGAACAGATCGAT ACTGCCACATACATGCCATCTTAATTGAAGTTTACATCTCAGTATGAAGGCATCATTTGC ACTGGTGGTGGAGGGTGTTGCAAACCGTTCTGTTATTTTATCAGACTGATTTTGAACGAT TTGTTTTATGCGGTAGAAGCTCGACGCTGATGTATAAGTGTTTTTAAATATGGGTGTGT
3' Flanking Sequence	GAAATTTGCGGTCCTCCACAACCTGTTACCCTGTAGGGCTTGGTTTGAGATGTTAGCAGA GTTGGAAATTTTAGAATTCATTTGCAGTATTATGTATGAAGTACCAGCCATCTCGCAGGG TCGGTCAAAACAGAAAGGATGAGACACTAGGAGGAGGGAGAACAAAGAAAATGTTATTTG CTTTAATATTATTTCGTGTCGGTATTGAGATTTTACTATGAAGATTTTGTTCGACGTTAT TTCTGTTATTTTTATATCGGTATCTGATAATGCAAGATTTCTGAATTCCGAATGCATTTC TATTGGGGAAATGATGATGTACGAAAAACCTGTTGTAACAGGTTCTGTTCGAGAAAGGAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 360

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	43.81	JPsnpHou00436	View

Sequence

>JPsnpHou00436 ID=JPsnpHou00436; Name=JPsnpHou00436; organism=Pyrus pyrifolia; type=genetic_marker; length=720bp
ATCAACTACGACATGCCAGATTCTGCTGACACTTACTTACACAGGGTTGG
CAGAGCTGGTAGGTTTGGCACCAAAGGTCTTGCTATTACGTTTGTTTCAT
CCGCAGCAGACTCTGATGTTCTAAATGATGTTCAGGAGAGGTTTGAGGTT
GACATAAAGGAGCTTCCTGAACAGATCGATACTGCCACATACATGCCATC
TTAATTGAAGTTTACATCTCAGTATGAAGGCATCATTTGCACTGGTGGTG
GAGGGTGTTGCAAACCGTTCTGTTATTTTATCAGACTGATTTTGAACGAT
TTGTTTTATGCGGTAGAAGCTCGACGCTGATGTATAAGTGTTTTTAAATA
TGGGTGTGTwGAAATTTGCGGTCCTCCACAACCTGTTACCCTGTAGGGCT
TGGTTTGAGATGTTAGCAGAGTTGGAAATTTTAGAATTCATTTGCAGTAT
TATGTATGAAGTACCAGCCATCTCGCAGGGTCGGTCAAAACAGAAAGGAT
GAGACACTAGGAGGAGGGAGAACAAAGAAAATGTTATTTGCTTTAATATT
ATTTCGTGTCGGTATTGAGATTTTACTATGAAGATTTTGTTCGACGTTAT
TTCTGTTATTTTTATATCGGTATCTGATAATGCAAGATTTCTGAATTCCG
AATGCATTTCTATTGGGGAAATGATGATGTACGAAAAACCTGTTGTAACA
GGTTCTGTTCGAGAAAGGAT