JPsnpHou00251, JPsnpHou00251 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00251
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CGACGATCTTGGCTCTCCTCTCGCTTAGACTTCTCTCATGTTTACTCTGATTTTCCTATT ATCGCCAACGGACATCAAGCCAAAAAAGCTTACTTATCAAGTTACGGATAGATAGAGGCA CTGCAGAAAGCTATATGTATTACCGAATTGAATGATCAAGAAGAGTCATGGTGAAGAGCC GGTTGTTTCCCTCAGATGAAGCCGCTGGCTGAATTGCGTGCTAACTGAAATACCGATGTT GGGATGTTTGCACTGTATTTTATGATCAAGATTCTTGATCACTGTGGTTTTTGGTTGAAT TTAATCTAATGCCACCCAATTTTCTTGTGTCAGTTTGGTCTGACTCTCTACTCGCACA
3' Flanking Sequence	TCACAGAGTTGTTGAGAATTGAGGTGCAAAGATGAATTGGATTGCAAATTCAATTGAAGC TATACATACTTTGTACTTGAAGAGCTCGTATAAATATAGTGGTGATATGTGAGGTAAATT ATTTTGGCACGTATTTTGTCTCTGTACGTTCTTGTTTATTTTTTAAATTATTCTTATTTG ATTAATTCAAATGCTAAAAGTGTGAGTCCTGTAATTGTATTTGTTTACTTATTTCTATCA TATCTTTAACCACGGTTGGCTATGATTACAACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 359

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG5	N/A	41.8	JPsnpHou00251	View

Sequence

>JPsnpHou00251 ID=JPsnpHou00251; Name=JPsnpHou00251; organism=Pyrus pyrifolia; type=genetic_marker; length=632bp
CGACGATCTTGGCTCTCCTCTCGCTTAGACTTCTCTCATGTTTACTCTGA
TTTTCCTATTATCGCCAACGGACATCAAGCCAAAAAAGCTTACTTATCAA
GTTACGGATAGATAGAGGCACTGCAGAAAGCTATATGTATTACCGAATTG
AATGATCAAGAAGAGTCATGGTGAAGAGCCGGTTGTTTCCCTCAGATGAA
GCCGCTGGCTGAATTGCGTGCTAACTGAAATACCGATGTTGGGATGTTTG
CACTGTATTTTATGATCAAGATTCTTGATCACTGTGGTTTTTGGTTGAAT
TTAATCTAATGCCACCCAATTTTCTTGTGTCAGTTTGGTCTGACTCTCTA
CTCGCACAkTCACAGAGTTGTTGAGAATTGAGGTGCAAAGATGAATTGGA
TTGCAAATTCAATTGAAGCTATACATACTTTGTACTTGAAGAGCTCGTAT
AAATATAGTGGTGATATGTGAGGTAAATTATTTTGGCACGTATTTTGTCT
CTGTACGTTCTTGTTTATTTTTTAAATTATTCTTATTTGATTAATTCAAA
TGCTAAAAGTGTGAGTCCTGTAATTGTATTTGTTTACTTATTTCTATCAT
ATCTTTAACCACGGTTGGCTATGATTACAACT