JPsnpHou00634, JPsnpHou00634 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00634
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGATTCGGAAAATGTGGTTAATGAGCTGGATGCAAGCAAGATATACATTGTTGGGGGAT TGGTGGATCGGAATCGTTGGAAAGGGATCACCATGAAGAAAGCAGAGGAGCAGGGTATCC AAACGGCCAAACTCCCCATAGGCAACTACTTGAACATGTCCTCTTCCCAGGTGCTAACTG TGAACCAAGTGATAGAGATACTGCTAAAGTATTTGGAAACAAAGGATTGGAAGGAGGCTT TCTTCCAAGTGATTCCTCAAAGAAAAAGGGGATGCCCGGCTGATTCAGATCAGCAATCTA AACAAGTGAATGGTGAAGAAAATGAAGAGAAAGATGATCAATTTGGAAGCAAAAAGC
3' Flanking Sequence	GTGTGCTCAAGTCAAGGGCCTTCCAATTCCATGATTTGTTAAGAGAATGTGCCTTTCTAT CTGTGTTTATGTTGGAGTTTAACATTCACACCACCTATTCACGGTGTCTTTTTGTAACAG AAGACGATCAATATAACAATGATAAGTGAAATTTCATTACATTTTGTTGTTGAAAGTTGA AGGAAGCCTGCTATTTGGCATGCAATGCAAATATATTTTCTAGACAAAAAAAAAAAAAAC T
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 358

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	217.11	JPsnpHou00634	View

Sequence

>JPsnpHou00634 ID=JPsnpHou00634; Name=JPsnpHou00634; organism=Pyrus pyrifolia; type=genetic_marker; length=599bp
CTGATTCGGAAAATGTGGTTAATGAGCTGGATGCAAGCAAGATATACATT
GTTGGGGGATTGGTGGATCGGAATCGTTGGAAAGGGATCACCATGAAGAA
AGCAGAGGAGCAGGGTATCCAAACGGCCAAACTCCCCATAGGCAACTACT
TGAACATGTCCTCTTCCCAGGTGCTAACTGTGAACCAAGTGATAGAGATA
CTGCTAAAGTATTTGGAAACAAAGGATTGGAAGGAGGCTTTCTTCCAAGT
GATTCCTCAAAGAAAAAGGGGATGCCCGGCTGATTCAGATCAGCAATCTA
AACAAGTGAATGGTGAAGAAAATGAAGAGAAAGATGATCAATTTGGAAGC
AAAAAGCrGTGTGCTCAAGTCAAGGGCCTTCCAATTCCATGATTTGTTAA
GAGAATGTGCCTTTCTATCTGTGTTTATGTTGGAGTTTAACATTCACACC
ACCTATTCACGGTGTCTTTTTGTAACAGAAGACGATCAATATAACAATGA
TAAGTGAAATTTCATTACATTTTGTTGTTGAAAGTTGAAGGAAGCCTGCT
ATTTGGCATGCAATGCAAATATATTTTCTAGACAAAAAAAAAAAAAACT