JPsnpHou00079, JPsnpHou00079 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00079
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGTTGAACCATATGTTACTTATGGGTACCCCAATTTGAAGAGCGTCAAGGAATTGATATA CAAGAGAGGGTACGGTAAGCTGAACAAGCAGAGGATTGCCTTGACTGATAATGCCATTGT TGAGGAGGCTCTTGGCAAATATGGCATCATCTGCACGGAAGATCTTATTCACGAGATCTT GACAGTTGGTCCTCATTTCAAGGAGGCCAATAACTTTCTGTGGCCATTCAAGCTTAAGGC ACCACTGGGCGGTCTTAAGAAGAAGAGGAACCACTACGTGGAAGGTGGAGATGCAGGAAA CCGTGAGAACTACATCAACGAGCTTATTAGGAGAATGAATTAGGTCTATGCAGTA
3' Flanking Sequence	TTCATTATTCCAGTCATTCGAGTTCTTTCTGTCAACTACAGGGGATCTGGCACTTACTCC TTTGTTTAAGTTGAACACTGGTTTCGCTTTAAGGTTCATGACTTGTTTTGGTGTCGGAAT ATTTGATTCACATTTGAAGACTTAAATGCTAGAAAGTTTTGTTACnTTATATAAATGTTT TGCATTCGAAAAAAAAAAANAAATAGATAGCGACGAGACACACGGAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 356

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG9	N/A	89.67	JPsnpHou00079	View

Sequence

>JPsnpHou00079 ID=JPsnpHou00079; Name=JPsnpHou00079; organism=Pyrus pyrifolia; type=genetic_marker; length=584bp
GGTTGAACCATATGTTACTTATGGGTACCCCAATTTGAAGAGCGTCAAGG
AATTGATATACAAGAGAGGGTACGGTAAGCTGAACAAGCAGAGGATTGCC
TTGACTGATAATGCCATTGTTGAGGAGGCTCTTGGCAAATATGGCATCAT
CTGCACGGAAGATCTTATTCACGAGATCTTGACAGTTGGTCCTCATTTCA
AGGAGGCCAATAACTTTCTGTGGCCATTCAAGCTTAAGGCACCACTGGGC
GGTCTTAAGAAGAAGAGGAACCACTACGTGGAAGGTGGAGATGCAGGAAA
CCGTGAGAACTACATCAACGAGCTTATTAGGAGAATGAATTAGGTCTATG
CAGTAyTTCATTATTCCAGTCATTCGAGTTCTTTCTGTCAACTACAGGGG
ATCTGGCACTTACTCCTTTGTTTAAGTTGAACACTGGTTTCGCTTTAAGG
TTCATGACTTGTTTTGGTGTCGGAATATTTGATTCACATTTGAAGACTTA
AATGCTAGAAAGTTTTGTTACnTTATATAAATGTTTTGCATTCGAAAAAA
AAAAANAAATAGATAGCGACGAGACACACGGAGG