JPsnpHou00180, JPsnpHou00180 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00180
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GTTCAAATCTGCAGTCTCACCTTAACCTTGCACTGCTTGATGTGGAGGATGACTCACTCT CCATGAGCAGCATTGAGCAAACTGTCTCCTTAGAGGACTACCTGAAGGGGCGGTGGAGCC GCTCGTCAAGCTTCGACTAACAAATTCACAAGCACAACAATGCTAGTAATTGCACCTTCC CGTTTGTGTGATTCATTTGTATATTAATCCCCACCGTGAAAATAAGAAAGGTAAGAAAAC AATGGCTTTGACATGTTGTGTGAGTGTTTGGGTTATAGTTATGGATGGGTTTAGGATGAG AGGTTGTTTGTGTTTGTGCCCTCCTCCTTCCCTAGCAGTCGTAAACTAGTCCTTA
3' Flanking Sequence	TTGTTGGACTGGTTTTCCTGGTTGGTTTTTTTTCCAGCTTACTTGTTGGTCTCAATCAGA CCAAGAGTTGGGACTGTTGTAATGTTCAAAGATGAATATGTTGTAATTCTGGTTGATTTT CATTTTCCTCCGAGTGAGCTCAAGTCCATACGAGGAAAACTTACATGAAACTGTTGCATA CCCTATTTTTTACGTAAATCTTTCCATTTACAAAAAAAAAAAAAAACCGAAGCTGCCAAG GCACACAGGGGATAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 356

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	52.71	JPsnpHou00180	View

Sequence

>JPsnpHou00180 ID=JPsnpHou00180; Name=JPsnpHou00180; organism=Pyrus pyrifolia; type=genetic_marker; length=612bp
GTTCAAATCTGCAGTCTCACCTTAACCTTGCACTGCTTGATGTGGAGGAT
GACTCACTCTCCATGAGCAGCATTGAGCAAACTGTCTCCTTAGAGGACTA
CCTGAAGGGGCGGTGGAGCCGCTCGTCAAGCTTCGACTAACAAATTCACA
AGCACAACAATGCTAGTAATTGCACCTTCCCGTTTGTGTGATTCATTTGT
ATATTAATCCCCACCGTGAAAATAAGAAAGGTAAGAAAACAATGGCTTTG
ACATGTTGTGTGAGTGTTTGGGTTATAGTTATGGATGGGTTTAGGATGAG
AGGTTGTTTGTGTTTGTGCCCTCCTCCTTCCCTAGCAGTCGTAAACTAGT
CCTTAwTTGTTGGACTGGTTTTCCTGGTTGGTTTTTTTTCCAGCTTACTT
GTTGGTCTCAATCAGACCAAGAGTTGGGACTGTTGTAATGTTCAAAGATG
AATATGTTGTAATTCTGGTTGATTTTCATTTTCCTCCGAGTGAGCTCAAG
TCCATACGAGGAAAACTTACATGAAACTGTTGCATACCCTATTTTTTACG
TAAATCTTTCCATTTACAAAAAAAAAAAAAAACCGAAGCTGCCAAGGCAC
ACAGGGGATAGG