JPsnpHou00262, JPsnpHou00262 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00262
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CAACAGTGAACTGACACTTTTAGCCCCGCCCGACAGCGCCTTCTCAAACCTCAAAACTGG CTCCCTCAACTCGCTCACTGATTCACAAAAAGTCGAGCTCTTGCAATACCATCTCATCCC AGATTTTCTCACGACCCAAAACTTCCAAACTCTGAGCAATCCGGTGAGTACCCAAGCCGG AGACGCATTCGAGTACCCGCTAAATATCACCACATCAGGCAATGCTGTGAACATTTCGAC TGGCCTTGTCAACACTTCAATCTCAGGCACTGTCTACTCTGATGGTCAGTTGGCTGTTTA CCAAGTTGACAGTGTGCTCCAACCCTACGGTATTTTTGCTCCCAAGACTCCGCC
3' Flanking Sequence	CCGTCACTGGCACCCGCTCCTGCAGAAGAGAAGCACAAGAAGAAGTCTTCATCTCATGAA CCTGTTGCTGAAGTGAAGTCTGGTGCTGTGCCTACACCGAATATCCCCAAGATTAATGGC ATTGTCTCTATTGGAGTTGCATTAGCTGCTGCAGCTATAAGCTTTTTGTGACGAAACTGT TTTGTGCCCACTGCCGTTGAATAATTCTTATACAAGCGATATTGCAGGTGGGGATTCGAA TTCGGATTGAATATGAAGGATAATGATGAACACGTAAGGTGAGGGGTTTGGAATAATGTT GTGTCTGGTAGACTTATTACCATTTTTATGCATGCCAGTTTGTGATCATATATGAGAGCA ATGCCTTGTAATTAATGGATTTTATGGGGTTCTTGTTCGTAATTTGCTTGTTCTTTTGTA CTGTATTTGTTGATAATTTTGTTTTGTTCTATTGTTATGCTAGCTTCAGTTGTAAATTCA ACAAGAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 355

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	73.47	JPsnpHou00262	View

Sequence

>JPsnpHou00262 ID=JPsnpHou00262; Name=JPsnpHou00262; organism=Pyrus pyrifolia; type=genetic_marker; length=844bp
CAACAGTGAACTGACACTTTTAGCCCCGCCCGACAGCGCCTTCTCAAACC
TCAAAACTGGCTCCCTCAACTCGCTCACTGATTCACAAAAAGTCGAGCTC
TTGCAATACCATCTCATCCCAGATTTTCTCACGACCCAAAACTTCCAAAC
TCTGAGCAATCCGGTGAGTACCCAAGCCGGAGACGCATTCGAGTACCCGC
TAAATATCACCACATCAGGCAATGCTGTGAACATTTCGACTGGCCTTGTC
AACACTTCAATCTCAGGCACTGTCTACTCTGATGGTCAGTTGGCTGTTTA
CCAAGTTGACAGTGTGCTCCAACCCTACGGTATTTTTGCTCCCAAGACTC
CGCCrCCGTCACTGGCACCCGCTCCTGCAGAAGAGAAGCACAAGAAGAAG
TCTTCATCTCATGAACCTGTTGCTGAAGTGAAGTCTGGTGCTGTGCCTAC
ACCGAATATCCCCAAGATTAATGGCATTGTCTCTATTGGAGTTGCATTAG
CTGCTGCAGCTATAAGCTTTTTGTGACGAAACTGTTTTGTGCCCACTGCC
GTTGAATAATTCTTATACAAGCGATATTGCAGGTGGGGATTCGAATTCGG
ATTGAATATGAAGGATAATGATGAACACGTAAGGTGAGGGGTTTGGAATA
ATGTTGTGTCTGGTAGACTTATTACCATTTTTATGCATGCCAGTTTGTGA
TCATATATGAGAGCAATGCCTTGTAATTAATGGATTTTATGGGGTTCTTG
TTCGTAATTTGCTTGTTCTTTTGTACTGTATTTGTTGATAATTTTGTTTT
GTTCTATTGTTATGCTAGCTTCAGTTGTAAATTCAACAAGAAAA