JPsnpHou00101, JPsnpHou00101 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00101
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	CAGCCGCAGCACAAGCTCTGATTGCAGCAGCAAACACATTCACATGCACATTTCCCACAC AACAAAGGAGCTTCTTCTTCTCCAGAAAACTTCATAAAGCTAATCATCTCACAGTAGTTA GAGCTTCCACCGAAGATGCTGACTGTAATGTGGAAGAATGTGCTCCTGACAAGGAGGTTG GAAAAGTGAGCGTGGAATGGTTGGCTGGTGAGAAGACAAAAATTTCTGGGACATTTCCAC CCCGCAATCGGGGTTGGACTGGATACGTTGAGAAGGACACTGCTGGGCAGACAAACATAT ATTCTGTGGAGCCTGCAGTTTACGTAGCAGAAAGCGTGATAAGCTCAGGAAC
3' Flanking Sequence	GCAGGGTCTTCTGCCGATGGAGCTGAGAACACAGCAGCAATCGCAGCTGGGGTTGCCCTC ATTGCTGTTGCTGCAGCTTCATCnGTACTCCTCCAAGTAGGTAAGAACTCACCTCCGGTG GTGCAGAAGGTAGATTACTCTGGGCCATCACTTAGTTACTACATCAACAAnTTCAAACCA GAGACAATCGAAGCCTTGGCGCCAAGTGTGGTTGAATCTTCCCAGCCGGAACCCTCCCAG ATTCAGGTTGAGTCACAGGTTCAGCCGGAGCCTTCTGCGAGCGATGTCAGCAATATCTCT TAGGCAATGAAGCTGCTGTAATTTTCTGATATGTAAAATTTACAAAAAGCTCTTCTTCTT TCTCATCACCAGTTTATCTGAGTAATTATTAGGATGTATGTTGTGATACATCTTTGAACA GCAAAATGTAAATCAAAGTACACAAGTTGTGGGGAATGTCATTTTGGAAGAATACGGGCT GTGAGAAATGACAGATTTTGAAGTGC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 353

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	142.62	JPsnpHou00101	View

Sequence

>JPsnpHou00101 ID=JPsnpHou00101; Name=JPsnpHou00101; organism=Pyrus pyrifolia; type=genetic_marker; length=859bp
CAGCCGCAGCACAAGCTCTGATTGCAGCAGCAAACACATTCACATGCACA
TTTCCCACACAACAAAGGAGCTTCTTCTTCTCCAGAAAACTTCATAAAGC
TAATCATCTCACAGTAGTTAGAGCTTCCACCGAAGATGCTGACTGTAATG
TGGAAGAATGTGCTCCTGACAAGGAGGTTGGAAAAGTGAGCGTGGAATGG
TTGGCTGGTGAGAAGACAAAAATTTCTGGGACATTTCCACCCCGCAATCG
GGGTTGGACTGGATACGTTGAGAAGGACACTGCTGGGCAGACAAACATAT
ATTCTGTGGAGCCTGCAGTTTACGTAGCAGAAAGCGTGATAAGCTCAGGA
ACwGCAGGGTCTTCTGCCGATGGAGCTGAGAACACAGCAGCAATCGCAGC
TGGGGTTGCCCTCATTGCTGTTGCTGCAGCTTCATCnGTACTCCTCCAAG
TAGGTAAGAACTCACCTCCGGTGGTGCAGAAGGTAGATTACTCTGGGCCA
TCACTTAGTTACTACATCAACAAnTTCAAACCAGAGACAATCGAAGCCTT
GGCGCCAAGTGTGGTTGAATCTTCCCAGCCGGAACCCTCCCAGATTCAGG
TTGAGTCACAGGTTCAGCCGGAGCCTTCTGCGAGCGATGTCAGCAATATC
TCTTAGGCAATGAAGCTGCTGTAATTTTCTGATATGTAAAATTTACAAAA
AGCTCTTCTTCTTTCTCATCACCAGTTTATCTGAGTAATTATTAGGATGT
ATGTTGTGATACATCTTTGAACAGCAAAATGTAAATCAAAGTACACAAGT
TGTGGGGAATGTCATTTTGGAAGAATACGGGCTGTGAGAAATGACAGATT
TTGAAGTGC