JPsnpHou00527, JPsnpHou00527 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00527
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	ACTTGGTTTTGATCACGAACGTCGGAGGAGCAGGAGACGTCCACTCTGTGTCGATCAAGG GTTCCAAGACAGGGTGGCAAGCCCTGTCAAGAAATTGGGGCCAGAACTGGCAGAGCAACT CTTACCTCAACGGCCAGAGCCTCTCCTTCCAGGTCACCACCAGCGACGGCAGAACTCTCA CCGCCAACAATGTTGCGCCGGGAAACTGGCAGTTCGGACAAACATTTGAGGGCAGTCAAT TCTGAGACTCCTCCGGCGGTAAAACAGTTAAAAAGTCTGGTGAATGGTGAATGGTGAAGG GTGAATTGTATATGGTAATTTGTACGTGGATGGGAAGAGGAGAGTTTGGGG
3' Flanking Sequence	GTAGTTTTAGGAGAGGCAACTGATTGCTGAGGTGGCTAACTGGCACCCGCTAGTCCTATA TATATAAATAATAATAATAATATTTATTTATATATAGTGAGGAGATTGTGAGTTTATAGT TAATTTATTAAAAATTTGTTAATCATAAGTAGAAGGACATGTAAGTTCTCGTATGAAAGG AACACAAGTACTATCGTTTCCAAATTTGACGAAGCATTTTGTACCTTTGGATGTGGTATG CAGGTTTTATTACTCATACCCAAAAGTAGGTACAGAACCCTGTTGGGGCAAATTTGTACT TCCCTCTTAATTATATACTTTGGTTGGTGCTCTTTTTTACCAAAAGTAAGAGGTTTTAGA TTCGATTCTC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 352

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	107.56	JPsnpHou00527	View

Sequence

>JPsnpHou00527 ID=JPsnpHou00527; Name=JPsnpHou00527; organism=Pyrus pyrifolia; type=genetic_marker; length=722bp
ACTTGGTTTTGATCACGAACGTCGGAGGAGCAGGAGACGTCCACTCTGTG
TCGATCAAGGGTTCCAAGACAGGGTGGCAAGCCCTGTCAAGAAATTGGGG
CCAGAACTGGCAGAGCAACTCTTACCTCAACGGCCAGAGCCTCTCCTTCC
AGGTCACCACCAGCGACGGCAGAACTCTCACCGCCAACAATGTTGCGCCG
GGAAACTGGCAGTTCGGACAAACATTTGAGGGCAGTCAATTCTGAGACTC
CTCCGGCGGTAAAACAGTTAAAAAGTCTGGTGAATGGTGAATGGTGAAGG
GTGAATTGTATATGGTAATTTGTACGTGGATGGGAAGAGGAGAGTTTGGG
GsGTAGTTTTAGGAGAGGCAACTGATTGCTGAGGTGGCTAACTGGCACCC
GCTAGTCCTATATATATAAATAATAATAATAATATTTATTTATATATAGT
GAGGAGATTGTGAGTTTATAGTTAATTTATTAAAAATTTGTTAATCATAA
GTAGAAGGACATGTAAGTTCTCGTATGAAAGGAACACAAGTACTATCGTT
TCCAAATTTGACGAAGCATTTTGTACCTTTGGATGTGGTATGCAGGTTTT
ATTACTCATACCCAAAAGTAGGTACAGAACCCTGTTGGGGCAAATTTGTA
CTTCCCTCTTAATTATATACTTTGGTTGGTGCTCTTTTTTACCAAAAGTA
AGAGGTTTTAGATTCGATTCTC