JPsnpHou00063, JPsnpHou00063 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00063
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAGCAGCGGCGGCCGCCGCGGCGGGGTCCACTCGCGGCTTGAGTCGGCTCTTCTCAACAA GTTTCATTCCCCCAATGAACTCTGCAACGCCCTCGGCTCGAGAGCAGGCTGAGCCGAGCA CCAACCTCTTCGTCTCCGGGCTCAGCAAACGTACTACTACAGAAAAACTACACGAAGCCT TTTCTCAGTTTGGTGAAGTAGTTCATGCTAGAGTGGTAACTGATCGGGTATCAGGATATT CTAAGGGATTTGGTTTTGTAAAGTATGCTACCTTAGAAGATGCTGCCAAAGGCATAGAGG GCATGGATGGAAAGTTTCTCGATGGTTGGGTCATATTTGCTGAATACGCAA
3' Flanking Sequence	ACCAAGACAGCCGCCTCCACCACCTCAGATCAATATGGCTTCTCCATATAGCCGTTATTA AATCCTGTATCCAGGGCGAGAAAGCTTGTCAGGTTAATAATATTTATCAACAGCTGGAGT TTATTGATCATACTTCATTTTTTGGTTCGAGGTTGGGTGGTCTTCATTGCCTGCGATTTC TGAAATGAAGTGGAGATTGTCCTAATCTGACCAATAAAGACAAGTCAAATGTAGTATAAT TCGTAAGTTTTAATGTGGTCTGCAAGACTGTTTGCTTTTGTAAACCTGTTGCGAAATTTC TTCTGATATATCATCTATTCTAAACCTCTTTTTGAACTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 352

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	138.91	JPsnpHou00063	View

Sequence

>JPsnpHou00063 ID=JPsnpHou00063; Name=JPsnpHou00063; organism=Pyrus pyrifolia; type=genetic_marker; length=692bp
GAGCAGCGGCGGCCGCCGCGGCGGGGTCCACTCGCGGCTTGAGTCGGCTC
TTCTCAACAAGTTTCATTCCCCCAATGAACTCTGCAACGCCCTCGGCTCG
AGAGCAGGCTGAGCCGAGCACCAACCTCTTCGTCTCCGGGCTCAGCAAAC
GTACTACTACAGAAAAACTACACGAAGCCTTTTCTCAGTTTGGTGAAGTA
GTTCATGCTAGAGTGGTAACTGATCGGGTATCAGGATATTCTAAGGGATT
TGGTTTTGTAAAGTATGCTACCTTAGAAGATGCTGCCAAAGGCATAGAGG
GCATGGATGGAAAGTTTCTCGATGGTTGGGTCATATTTGCTGAATACGCA
ArACCAAGACAGCCGCCTCCACCACCTCAGATCAATATGGCTTCTCCATA
TAGCCGTTATTAAATCCTGTATCCAGGGCGAGAAAGCTTGTCAGGTTAAT
AATATTTATCAACAGCTGGAGTTTATTGATCATACTTCATTTTTTGGTTC
GAGGTTGGGTGGTCTTCATTGCCTGCGATTTCTGAAATGAAGTGGAGATT
GTCCTAATCTGACCAATAAAGACAAGTCAAATGTAGTATAATTCGTAAGT
TTTAATGTGGTCTGCAAGACTGTTTGCTTTTGTAAACCTGTTGCGAAATT
TCTTCTGATATATCATCTATTCTAAACCTCTTTTTGAACTTT