JPsnpHou00273, JPsnpHou00273 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00273
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ATCCAAGCTTGTCCTTGAGGCCCTTTTCTTCAAAGCTGAGGCTCCACACAGGCAGCGAAT TCTTGCAGCAGAGGAGTCAGCTACCTTGAATCGTCGGTTTGTGGAGCGGGCATACAAGTA TCGCCCTGTTAAGGTGGTAGAATTTGATCTTCCGAGACAGCAGTGTGTGGTGTACCTGGA CTTGAAGCGGGAAGAGTGTGCAAATTTATTCCCATCCGGACGGGTTTATTCTCAGGCATT TCACTTGGGCGGGCAAGGGTTCTTCCTCTCTGCTCATTGCAACATGGACCAGCAGAGTTC TTTCCATTGTTTTGGCCTGTTTTTGGGGATGCAGGAAAAAGGGTCAGT
3' Flanking Sequence	AGTTTTGCAGTGGACTACGAATTTGCGGCGAGATCAAAGCCAACTGAGGAATTCATCAGC AAATACAAAGGCAACTACACATTTACCGGGGGCAAGGCAGTTGGCTACCGTAACTTATTC GCCATACCATGGACTTCCTTCATGGCCGATGATAGTCTTTTCTTCATAAACGGCGTCCTC CATCTTAGAGCGGAGCTTACCATCAAACAGTGACTTGTCTGTCAAGCCGATTGTCGAAGC ACAAGTTTAATTTTCGTTTTGCTTTTATGTGTTTGCTTTTTACCATCCTTGTCCTAACTT GGACAAGGCATTGTAATAACTAGCCACCATTTAGCnCTCTCCGGTTGAGGGCTTAAACAT GATTACAACTATTTACTTTTCCATCCTCTGTTAATCGTGATTATCATGTATTTAAGGTAT A
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 349

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	71.89	JPsnpHou00273	View

Sequence

>JPsnpHou00273 ID=JPsnpHou00273; Name=JPsnpHou00273; organism=Pyrus pyrifolia; type=genetic_marker; length=770bp
ATCCAAGCTTGTCCTTGAGGCCCTTTTCTTCAAAGCTGAGGCTCCACACA
GGCAGCGAATTCTTGCAGCAGAGGAGTCAGCTACCTTGAATCGTCGGTTT
GTGGAGCGGGCATACAAGTATCGCCCTGTTAAGGTGGTAGAATTTGATCT
TCCGAGACAGCAGTGTGTGGTGTACCTGGACTTGAAGCGGGAAGAGTGTG
CAAATTTATTCCCATCCGGACGGGTTTATTCTCAGGCATTTCACTTGGGC
GGGCAAGGGTTCTTCCTCTCTGCTCATTGCAACATGGACCAGCAGAGTTC
TTTCCATTGTTTTGGCCTGTTTTTGGGGATGCAGGAAAAAGGGTCAGTrA
GTTTTGCAGTGGACTACGAATTTGCGGCGAGATCAAAGCCAACTGAGGAA
TTCATCAGCAAATACAAAGGCAACTACACATTTACCGGGGGCAAGGCAGT
TGGCTACCGTAACTTATTCGCCATACCATGGACTTCCTTCATGGCCGATG
ATAGTCTTTTCTTCATAAACGGCGTCCTCCATCTTAGAGCGGAGCTTACC
ATCAAACAGTGACTTGTCTGTCAAGCCGATTGTCGAAGCACAAGTTTAAT
TTTCGTTTTGCTTTTATGTGTTTGCTTTTTACCATCCTTGTCCTAACTTG
GACAAGGCATTGTAATAACTAGCCACCATTTAGCnCTCTCCGGTTGAGGG
CTTAAACATGATTACAACTATTTACTTTTCCATCCTCTGTTAATCGTGAT
TATCATGTATTTAAGGTATA