JPsnpHou00272, JPsnpHou00272 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00272
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTGAACTCAAAAGAAGGTCCCCCGACTTTCGAGCAACCTCAGATGACCTTGGAGAAGCTC CTTAGCTATGGTCAAATGCTTGTTCAGGAGCAAGACAATGTGAAGAGAGTCCAACTGGCT GACAAGTACTTGGCTGATGCAGCCCTCGGAGATGCAAACCAGGACTCCATTAGCAGAGGA GAATTCTATGGAAAGGCAGCCCAACAAGTTAAAGTACCAGTCGCAGAAGGGTGCACTGAT CCAACAGCTGCAAACTTTGACCCAACAGCAAGGAGTGACAATGGTAGCTGTCAGTACGAA TGAAGTGATTGAAGTCAGAAGAAAATAAATATATAGTTTGCTGGGTTA
3' Flanking Sequence	TGATATTACCTTTGTAATTTACGCTTGCATTTCCATGGAAATACATGCTTTATTTCGTTT TAACTTTTTAACTATTATACTAGCTATTGCTnGTCCGGCTATTGTAAGGAAGACAAGAAC AGAATGTCATGTCGTCGATAATATGTTGTTGTCGTTGTCGAAAACAAAACCTAGCAATAT GTTACAATACAGTTGTGATGGGATCAATACAATATCGATGGATGTTCGTTCCTAGTAAAA AAAAAAAAAAACTAAAGAGACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 349

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	120.16	JPsnpHou00272	View

Sequence

>JPsnpHou00272 ID=JPsnpHou00272; Name=JPsnpHou00272; organism=Pyrus pyrifolia; type=genetic_marker; length=611bp
GTGAACTCAAAAGAAGGTCCCCCGACTTTCGAGCAACCTCAGATGACCTT
GGAGAAGCTCCTTAGCTATGGTCAAATGCTTGTTCAGGAGCAAGACAATG
TGAAGAGAGTCCAACTGGCTGACAAGTACTTGGCTGATGCAGCCCTCGGA
GATGCAAACCAGGACTCCATTAGCAGAGGAGAATTCTATGGAAAGGCAGC
CCAACAAGTTAAAGTACCAGTCGCAGAAGGGTGCACTGATCCAACAGCTG
CAAACTTTGACCCAACAGCAAGGAGTGACAATGGTAGCTGTCAGTACGAA
TGAAGTGATTGAAGTCAGAAGAAAATAAATATATAGTTTGCTGGGTTAyT
GATATTACCTTTGTAATTTACGCTTGCATTTCCATGGAAATACATGCTTT
ATTTCGTTTTAACTTTTTAACTATTATACTAGCTATTGCTnGTCCGGCTA
TTGTAAGGAAGACAAGAACAGAATGTCATGTCGTCGATAATATGTTGTTG
TCGTTGTCGAAAACAAAACCTAGCAATATGTTACAATACAGTTGTGATGG
GATCAATACAATATCGATGGATGTTCGTTCCTAGTAAAAAAAAAAAAAAA
CTAAAGAGACT