JPsnpHou00276, JPsnpHou00276 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00276
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGGAACTCATACGTATTGAGGGCTGCTTTCCAGCTTTGCGTAACCTTTACCTAAACAACA ACTACCTTACGGGAGGGATTCCAGCACAGCTCGCCAACTTGACCAAATTGGAAATCTTGT ACCTATCGTACAACAAGATGTCTGGGATTGTTCCATTAGGACTTTCCCATATTCCGAGAT TGACTTACTTGTACTTGGATCACAATCAATTTTCTGGGAGAATTCCCGATGCCTTCTACA AACACCCATTTTTGAAAGACATGTATATTGAAGGGAATGCATTCCGACCAGGCGTAAAAC CAATAGGCATACACAAAGTTCTCGAGCTCACTGACACGGAATTTCTC
3' Flanking Sequence	TTTAGTCAAAAGACATCGAACTATTATTTATTTGTTTTAACCAATTGTGCTTAGTACTGC CCAAACAAGGGTTCACATAGTCGCTGAATCAATGAAATAGAAATCTGTATCGACGAAGTT TTGCCGTCACTGGTGAGTTCCTATGTTGCTACCTCCCCAAGGAGTTGCTTATATGGTAGA TAGTAGCAGGTAATGTTAGGACTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 348

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	24.73	JPsnpHou00276	View

Sequence

>JPsnpHou00276 ID=JPsnpHou00276; Name=JPsnpHou00276; organism=Pyrus pyrifolia; type=genetic_marker; length=552bp
GGGAACTCATACGTATTGAGGGCTGCTTTCCAGCTTTGCGTAACCTTTAC
CTAAACAACAACTACCTTACGGGAGGGATTCCAGCACAGCTCGCCAACTT
GACCAAATTGGAAATCTTGTACCTATCGTACAACAAGATGTCTGGGATTG
TTCCATTAGGACTTTCCCATATTCCGAGATTGACTTACTTGTACTTGGAT
CACAATCAATTTTCTGGGAGAATTCCCGATGCCTTCTACAAACACCCATT
TTTGAAAGACATGTATATTGAAGGGAATGCATTCCGACCAGGCGTAAAAC
CAATAGGCATACACAAAGTTCTCGAGCTCACTGACACGGAATTTCTCrTT
TAGTCAAAAGACATCGAACTATTATTTATTTGTTTTAACCAATTGTGCTT
AGTACTGCCCAAACAAGGGTTCACATAGTCGCTGAATCAATGAAATAGAA
ATCTGTATCGACGAAGTTTTGCCGTCACTGGTGAGTTCCTATGTTGCTAC
CTCCCCAAGGAGTTGCTTATATGGTAGATAGTAGCAGGTAATGTTAGGAC
TT