JPsnpHou00625, JPsnpHou00625 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00625
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TTGTCTTTGAGCGCGGGGATTTAGTTTTTGTGTTCAATTTTCATCCAAAAAACACATACG AAGGGTATAAAGTTGGGTGTGACTTACCTGGGAAGTACAGAGTTGCACTAGATAGTGATG CTTGGGAGTTTGGTGGCCATGGAAGAGTGGGCCATGATGTAGAACACTTCACATTCCCAG AAGGAATACCGGGGGTTCCTGAAACAAATTTCAACAACCGTCCCAACTCCTTCAAAATAC TCTCACCGGCTCAAACATGTGTGGTTTATTATCGAGTGGATGAAAGTGAGGAGGCAGATG CGGAGGAGACATCAATAGAAGAGGAAGTTGGGGTTGGGCAGGAGAA
3' Flanking Sequence	TTTGAAGAACAAACTGGTCCCATAAATGATGACAATGCTGTTGGTCCAAGAGCACAAGAG AGTGACCAAGGGTCATCnTCGGACTGACATTTTTTGCTCTTTGTAGATATAATCTGTGGC CTGTGCCTGCCTGTGGGTGTGAACAATAAAAATAATGAGTGTTAAACGCTCTCTAGAAGT TTGTACAACTTGCATAATGTAGATGAAGTTGCAGACTAGAATGTGTATATATACATGAAA ATAAACAAATTTTCCAATAAAAAAAAAAAAACAAAACGAAACGTNACGACGAACGAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 347

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	25.1	JPsnpHou00625	View

Sequence

>JPsnpHou00625 ID=JPsnpHou00625; Name=JPsnpHou00625; organism=Pyrus pyrifolia; type=genetic_marker; length=644bp
TTGTCTTTGAGCGCGGGGATTTAGTTTTTGTGTTCAATTTTCATCCAAAA
AACACATACGAAGGGTATAAAGTTGGGTGTGACTTACCTGGGAAGTACAG
AGTTGCACTAGATAGTGATGCTTGGGAGTTTGGTGGCCATGGAAGAGTGG
GCCATGATGTAGAACACTTCACATTCCCAGAAGGAATACCGGGGGTTCCT
GAAACAAATTTCAACAACCGTCCCAACTCCTTCAAAATACTCTCACCGGC
TCAAACATGTGTGGTTTATTATCGAGTGGATGAAAGTGAGGAGGCAGATG
CGGAGGAGACATCAATAGAAGAGGAAGTTGGGGTTGGGCAGGAGAAyTTT
GAAGAACAAACTGGTCCCATAAATGATGACAATGCTGTTGGTCCAAGAGC
ACAAGAGAGTGACCAAGGGTCATCnTCGGACTGACATTTTTTGCTCTTTG
TAGATATAATCTGTGGCCTGTGCCTGCCTGTGGGTGTGAACAATAAAAAT
AATGAGTGTTAAACGCTCTCTAGAAGTTTGTACAACTTGCATAATGTAGA
TGAAGTTGCAGACTAGAATGTGTATATATACATGAAAATAAACAAATTTT
CCAATAAAAAAAAAAAAACAAAACGAAACGTNACGACGAACGAC