JPsnpHou00073, JPsnpHou00073 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00073
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GTCGTTTTCGGGTCCTCGGGTCGGGAACGTACGGTTTAAGGAGCGGCTCGAGTCGTTGGG TGTTAAAGTGTTGAGAGTGGTGAACGTTCACGATGTGGTCCCCAAGTCGCCCGGGCTGTT CTTTAACGAACACGTGGCGCCGAGGGTCATGAAGTTAGCGGAGGGTCTGCCGTGGAGCTA TTCGCATGTCGGAGTGGAGCTTAAGCTGGATCACAAAAACTCGCCCTTTTTGAAGCCGAC GAATGACCCTGGTTGCGCCCATAATTTGGAGGCTCACTTGCATTTGCTGGATGGGTACCA TGGAAAAGGCCACAGATTTGTGCTAGCCAGTGGAAGAGACCC
3' Flanking Sequence	GCACTGGTGAACAAAGCCTCGGATTTTTTGAAAGACCATTACTTGGTTCCACCTTACTGG AGGCAAGATCATAACAAGGGCATGGTGAGGTGCAAGGACGGCCGGTGGATCCAGGCCGAA CGGCCGAAACTCGACGATCATCACCCCGAAGACATACACCACCATCTCAAGCAACTAGGC CTTGCTTCTGATCACTAAnTAGCATTCCAATCTTCTTCAACTGTATATATAGCAGGGTTT ATGTGAAGGATTGTTAATGTTGATGATTGCGAAAAATGTAATAAAACGAAGAGTGCTGTG TGACAATGCACGAAATTTCAATGTACATACCGTTTCATAACAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 343

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	140.48	JPsnpHou00073	View

Sequence

>JPsnpHou00073 ID=JPsnpHou00073; Name=JPsnpHou00073; organism=Pyrus pyrifolia; type=genetic_marker; length=696bp
GTCGTTTTCGGGTCCTCGGGTCGGGAACGTACGGTTTAAGGAGCGGCTCG
AGTCGTTGGGTGTTAAAGTGTTGAGAGTGGTGAACGTTCACGATGTGGTC
CCCAAGTCGCCCGGGCTGTTCTTTAACGAACACGTGGCGCCGAGGGTCAT
GAAGTTAGCGGAGGGTCTGCCGTGGAGCTATTCGCATGTCGGAGTGGAGC
TTAAGCTGGATCACAAAAACTCGCCCTTTTTGAAGCCGACGAATGACCCT
GGTTGCGCCCATAATTTGGAGGCTCACTTGCATTTGCTGGATGGGTACCA
TGGAAAAGGCCACAGATTTGTGCTAGCCAGTGGAAGAGACCCwGCACTGG
TGAACAAAGCCTCGGATTTTTTGAAAGACCATTACTTGGTTCCACCTTAC
TGGAGGCAAGATCATAACAAGGGCATGGTGAGGTGCAAGGACGGCCGGTG
GATCCAGGCCGAACGGCCGAAACTCGACGATCATCACCCCGAAGACATAC
ACCACCATCTCAAGCAACTAGGCCTTGCTTCTGATCACTAAnTAGCATTC
CAATCTTCTTCAACTGTATATATAGCAGGGTTTATGTGAAGGATTGTTAA
TGTTGATGATTGCGAAAAATGTAATAAAACGAAGAGTGCTGTGTGACAAT
GCACGAAATTTCAATGTACATACCGTTTCATAACAAAAAAAAAAAA