JPsnpHou00376, JPsnpHou00376 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00376
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTCAAATCCTTTGAATTCACGCCCAGCAAAAACAAAACTCAAACCCACCATCTCATGGCT CTCAGTCTCTTTGGCGGACGACGAAGCAACGTCTTCGACCCCTTCTCTCTGGACACCTGG GACCCATTCGAGGGCTTCGGCGCTCTGGCCAACATCCCCTCCTCCGCCCGTGAAACCACC GCCATCGCCAACACCCGCATCGACTGGAAGGAGACCCCGGAGGCCCACATCTTCAAGGCG GACCTCCCGGGGATAAAAAAGGAGGAGGTGAAAGTGGAGGTGGAGGACGGGAGGGTCCTG CAGATCAGCGGCGAGAGGAGCCGGGAGCAGGAGGAGAAGAA
3' Flanking Sequence	GACAAGTGGCACAGGGTGGAGAGGAGCAGTGGCAAGTTTATGAGGAGGTTCAGGCTGCCG GAGAACGCGAAACTTGATCAGGTGAAGGCGGCGATGGAGAATGGGGTGCTGACTGTGACT GTGCCGAAAGAGGAGGAGAAAAGGCCTGAGGTCAAGGCCATTGACATCTCCGGCTAAACT AAATTCGCATAACCTGGATCGGCTACTTTTGAGCTCTGTTTTGGTGTGTTGTTAAGTTCT GCTTGTGTGTATTTCCGAGTCTCTGTATGTGACATGAGTGATATGGTGTATCAATTATTA TGTATGGGTTCTTGTTCTAAATATTATGGTAAATCTTCATAAAAGTTTGCATTTTATTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 342

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	102.86	JPsnpHou00376	View

Sequence

>JPsnpHou00376 ID=JPsnpHou00376; Name=JPsnpHou00376; organism=Pyrus pyrifolia; type=genetic_marker; length=701bp
GTCAAATCCTTTGAATTCACGCCCAGCAAAAACAAAACTCAAACCCACCA
TCTCATGGCTCTCAGTCTCTTTGGCGGACGACGAAGCAACGTCTTCGACC
CCTTCTCTCTGGACACCTGGGACCCATTCGAGGGCTTCGGCGCTCTGGCC
AACATCCCCTCCTCCGCCCGTGAAACCACCGCCATCGCCAACACCCGCAT
CGACTGGAAGGAGACCCCGGAGGCCCACATCTTCAAGGCGGACCTCCCGG
GGATAAAAAAGGAGGAGGTGAAAGTGGAGGTGGAGGACGGGAGGGTCCTG
CAGATCAGCGGCGAGAGGAGCCGGGAGCAGGAGGAGAAGAAyGACAAGTG
GCACAGGGTGGAGAGGAGCAGTGGCAAGTTTATGAGGAGGTTCAGGCTGC
CGGAGAACGCGAAACTTGATCAGGTGAAGGCGGCGATGGAGAATGGGGTG
CTGACTGTGACTGTGCCGAAAGAGGAGGAGAAAAGGCCTGAGGTCAAGGC
CATTGACATCTCCGGCTAAACTAAATTCGCATAACCTGGATCGGCTACTT
TTGAGCTCTGTTTTGGTGTGTTGTTAAGTTCTGCTTGTGTGTATTTCCGA
GTCTCTGTATGTGACATGAGTGATATGGTGTATCAATTATTATGTATGGG
TTCTTGTTCTAAATATTATGGTAAATCTTCATAAAAGTTTGCATTTTATT
T