JPsnpHou00092, JPsnpHou00092 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00092
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GTTGCCAGCACACCTGCTCCCCATGATATACCAGTGAGCACTCCAGCTCCGGTTGTTCAA AATGATGTTGGAGATGATGATGATGATGAGCCCCCATTGAATGAAAATGATGACGATGAG TTGGATGATGTGGACCAAGGCGATGAGCTAAACACAGCACATTTGGTTTTGGCCCAGTTT GACAAGGTAACGCGCACCAAGAGCAAGTGGAAGTGCACATTGAAGGACGGCATTATGCAC ATAAACAACAAGGATATTCTCTTCAACAAGGCGACGGGAGAATTTGAnTTCTGAATTTCA TGGAGAAAGCCTATTTTGGCAAACAGCGGCAGTTGCCCTA
3' Flanking Sequence	TGAAGCAAGTCCGAGATGATATCATCGGGTGTTTCCTAATTTTTCTTTATGAATTGTTAT TAnGnGAGAGGTTGAGGGGAAGAGAAAGACAATGCTAGATACTTTGTTTTAAAGAATATG GGATGGATGTTGTTGGCCTATTGTACATACAGGATGAGCTTTTTTGGCCTTTTAAAAATG GGATTGGCTACTCGTGCGTACGGACGTTTTATATTTCTTTGATGGAATGCAACTGCATTA AATTGGTTTACTTGCAATGCAATTCGATTATTATCTTCGAAGAAAAAAAAAAAACCGAGA CTGCCAAGGCACACAGGGGATA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 341

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	120.16	JPsnpHou00092	View

Sequence

>JPsnpHou00092 ID=JPsnpHou00092; Name=JPsnpHou00092; organism=Pyrus pyrifolia; type=genetic_marker; length=663bp
GTTGCCAGCACACCTGCTCCCCATGATATACCAGTGAGCACTCCAGCTCC
GGTTGTTCAAAATGATGTTGGAGATGATGATGATGATGAGCCCCCATTGA
ATGAAAATGATGACGATGAGTTGGATGATGTGGACCAAGGCGATGAGCTA
AACACAGCACATTTGGTTTTGGCCCAGTTTGACAAGGTAACGCGCACCAA
GAGCAAGTGGAAGTGCACATTGAAGGACGGCATTATGCACATAAACAACA
AGGATATTCTCTTCAACAAGGCGACGGGAGAATTTGAnTTCTGAATTTCA
TGGAGAAAGCCTATTTTGGCAAACAGCGGCAGTTGCCCTAkTGAAGCAAG
TCCGAGATGATATCATCGGGTGTTTCCTAATTTTTCTTTATGAATTGTTA
TTAnGnGAGAGGTTGAGGGGAAGAGAAAGACAATGCTAGATACTTTGTTT
TAAAGAATATGGGATGGATGTTGTTGGCCTATTGTACATACAGGATGAGC
TTTTTTGGCCTTTTAAAAATGGGATTGGCTACTCGTGCGTACGGACGTTT
TATATTTCTTTGATGGAATGCAACTGCATTAAATTGGTTTACTTGCAATG
CAATTCGATTATTATCTTCGAAGAAAAAAAAAAAACCGAGACTGCCAAGG
CACACAGGGGATA