JPsnpHou00616, JPsnpHou00616 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00616
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CGGAATTGTTGTTGGATTTGTGATGCGGCCTTACATATTCCCCAATGAGGGCTGCAAGCG GCTCGTCTCCCGCGCAACATGGAAGCGCTGCCGAATCATTCTGGGGAAGCAAGTAGTACA GACACTTTGCTTCGCCGTCAGAGGCTCATCTGCTAGCTATGGCCCTGTTTTGTCGTTGTT GAGGCAGCTGTATCTGTTGGGCATCTCTCAAATTTCTCTTATGTTTAGGATTAACTACGT AGAGGATTCCCGGAATCCGCCCAAGGAGTGTGTGTCTTTGCTTGATTCCGATGTTGATAA CAGTAGTAGTAATTGTTTTGAGATAACAGAGTCGTCGTC
3' Flanking Sequence	AAGTATGTGGATCAGCTTAAGGATTTGGCGGGTTTCGATGGAAACCTGGAACTGTGCAGC ATGAAGGAAGGAGACGGCAGTGATGGGACGAGCGATGTGTTATCTAGCTCCCATGGAAGA ATAGAGGGTCTGATAGAnAGTAATATTATGGGATTTGTGGAGGGAGCTAAAGAAACGAGT CTGGTGGATGGGGTTTTGGGCGGTAATTCGGGTTTAGTTAAAAGGAGATGAAGTGAAAAA ACAAGAAGACGTCTGTTGTATATATGGTTGATTTCCAGTTGTGAGGATTGTGAACTTTTT GAATATGTTTTTGTCAGTTATAAATATGTTGATACCACACTCAGGTGAATGGTATCTGTC ATCTTAGAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 340

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	44.6	JPsnpHou00616	View

Sequence

>JPsnpHou00616 ID=JPsnpHou00616; Name=JPsnpHou00616; organism=Pyrus pyrifolia; type=genetic_marker; length=719bp
CGGAATTGTTGTTGGATTTGTGATGCGGCCTTACATATTCCCCAATGAGG
GCTGCAAGCGGCTCGTCTCCCGCGCAACATGGAAGCGCTGCCGAATCATT
CTGGGGAAGCAAGTAGTACAGACACTTTGCTTCGCCGTCAGAGGCTCATC
TGCTAGCTATGGCCCTGTTTTGTCGTTGTTGAGGCAGCTGTATCTGTTGG
GCATCTCTCAAATTTCTCTTATGTTTAGGATTAACTACGTAGAGGATTCC
CGGAATCCGCCCAAGGAGTGTGTGTCTTTGCTTGATTCCGATGTTGATAA
CAGTAGTAGTAATTGTTTTGAGATAACAGAGTCGTCGTCyAAGTATGTGG
ATCAGCTTAAGGATTTGGCGGGTTTCGATGGAAACCTGGAACTGTGCAGC
ATGAAGGAAGGAGACGGCAGTGATGGGACGAGCGATGTGTTATCTAGCTC
CCATGGAAGAATAGAGGGTCTGATAGAnAGTAATATTATGGGATTTGTGG
AGGGAGCTAAAGAAACGAGTCTGGTGGATGGGGTTTTGGGCGGTAATTCG
GGTTTAGTTAAAAGGAGATGAAGTGAAAAAACAAGAAGACGTCTGTTGTA
TATATGGTTGATTTCCAGTTGTGAGGATTGTGAACTTTTTGAATATGTTT
TTGTCAGTTATAAATATGTTGATACCACACTCAGGTGAATGGTATCTGTC
ATCTTAGAAAAAAAAAAAA