JPsnpHou00366, JPsnpHou00366 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00366
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	CCTAGTTGAAGAGAAGAGAAGAAGCTTGGCTCTCTCTAATCCCATTGGAATGGAGGAAAG AAGGGGTGCAATTTCTTCGATGTCCGGATTTTAGGTTACGTACCCTACAGTTGTCACTAA TCGGACTGTCTGAGGCTTGCACAGTAATTGGCCAAGTGGAGTTTTATTACAAGCAATTCC CAGAAAACATGAGAAGCATTGGGGGTTCATTTTTGTTTGTAGGGATGGCAATGTCCAATT ACCTGAGTAGTTTTTTGGTGTCCATAGTTCACCATACCAGTGATTGGCTGCCTGAAGATC TTAACAAGGGGAGATTGGATTACTTTTATTATGTGGTG
3' Flanking Sequence	TTGTATTGGAGGTTTTGAATCTTGTCTATTTCGTAGTACTTGCTAGGTGGTTTAAGTACA AAGGAAGTGGTGGAAGTGCCTCTGAAATTGGGATGGAGAATATGCAATCTGAGAAACATC TTGTTTGATAGACTAAGATCAAACGTAGCCAGCTAGCTACAAAATCGTGGTCTCGATTAG GGAAATCATGCAAGAAACAAGTGTAAAATTTTTTCTGTTACAATTTTATTTTACTCCnCT TATGTACGGTTATTTTAAAGGAGCATGAATTTAGTTGCATGCAAAAATTTCTTACAGTAT ACCAAAAGAAAATTTTACAATTGCAACACGTGTTTGCTGTTTTAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 339

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	176.63	JPsnpHou00366	View

Sequence

>JPsnpHou00366 ID=JPsnpHou00366; Name=JPsnpHou00366; organism=Pyrus pyrifolia; type=genetic_marker; length=685bp
CCTAGTTGAAGAGAAGAGAAGAAGCTTGGCTCTCTCTAATCCCATTGGAA
TGGAGGAAAGAAGGGGTGCAATTTCTTCGATGTCCGGATTTTAGGTTACG
TACCCTACAGTTGTCACTAATCGGACTGTCTGAGGCTTGCACAGTAATTG
GCCAAGTGGAGTTTTATTACAAGCAATTCCCAGAAAACATGAGAAGCATT
GGGGGTTCATTTTTGTTTGTAGGGATGGCAATGTCCAATTACCTGAGTAG
TTTTTTGGTGTCCATAGTTCACCATACCAGTGATTGGCTGCCTGAAGATC
TTAACAAGGGGAGATTGGATTACTTTTATTATGTGGTGsTTGTATTGGAG
GTTTTGAATCTTGTCTATTTCGTAGTACTTGCTAGGTGGTTTAAGTACAA
AGGAAGTGGTGGAAGTGCCTCTGAAATTGGGATGGAGAATATGCAATCTG
AGAAACATCTTGTTTGATAGACTAAGATCAAACGTAGCCAGCTAGCTACA
AAATCGTGGTCTCGATTAGGGAAATCATGCAAGAAACAAGTGTAAAATTT
TTTCTGTTACAATTTTATTTTACTCCnCTTATGTACGGTTATTTTAAAGG
AGCATGAATTTAGTTGCATGCAAAAATTTCTTACAGTATACCAAAAGAAA
ATTTTACAATTGCAACACGTGTTTGCTGTTTTAGG