JPsnpHou00601, JPsnpHou00601 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00601
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	TGCATGGCTTCGTCATATAGAGCCACTTTTTAATGGTGTGGGTCTGGTGTTACTAGCTCA TTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCATGCTGATGATGACGAGACTGT TTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGTTAACATGGGTTAGGAACACACA GTATGTGGAAAGGTTGGTGGACGAACTTGCTGTTCTGTACAAAGAAGCAGCATTGAAAAG GTCCCGTGAAGGAATTAGAGATCTTGTTATTCGGATACTGATCCTGCTCCACCAATGCAA AGGCATGCAGTTCGAAGCAGCCTGGGGAAAGCACAG
3' Flanking Sequence	GATGATCCAAACTTAGCGACCATTGGTGCCAGTTTAGGTGAAnGAAAAGCAACGGTTGTC CAATTACCGTATGCGGAAAGAGTTTAGTTTCGCGAAGGAGTTTACGTGCAGATGTAAATA TGACTCTTGATTATATGTAACATTTCTTCCCAGTATAATTTGGTAGTTATTTGATTTTGG CCTTGCTCATCATATGTGCCGCTTAGGATATGCCGATACAGTTTATT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 337

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	64.73	JPsnpHou00601	View

Sequence

>JPsnpHou00601 ID=JPsnpHou00601; Name=JPsnpHou00601; organism=Pyrus pyrifolia; type=genetic_marker; length=564bp
TGCATGGCTTCGTCATATAGAGCCACTTTTTAATGGTGTGGGTCTGGTGT
TACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAT
GCTGATGATGACGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGT
TATAAAGTTAACATGGGTTAGGAACACACAGTATGTGGAAAGGTTGGTGG
ACGAACTTGCTGTTCTGTACAAAGAAGCAGCATTGAAAAGGTCCCGTGAA
GGAATTAGAGATCTTGTTATTCGGATACTGATCCTGCTCCACCAATGCAA
AGGCATGCAGTTCGAAGCAGCCTGGGGAAAGCACAGwGATGATCCAAACT
TAGCGACCATTGGTGCCAGTTTAGGTGAAnGAAAAGCAACGGTTGTCCAA
TTACCGTATGCGGAAAGAGTTTAGTTTCGCGAAGGAGTTTACGTGCAGAT
GTAAATATGACTCTTGATTATATGTAACATTTCTTCCCAGTATAATTTGG
TAGTTATTTGATTTTGGCCTTGCTCATCATATGTGCCGCTTAGGATATGC
CGATACAGTTTATT