JPsnpHou00127, JPsnpHou00127 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00127
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	TGAACTTGATGTGGATTTTGCTCAGTGGAGCCTGGTTGGGAGTTATTATTTAAGGCAAGG GGTGACGGGTATGGAAGAGTATTATGGAATCTTGAACTCGGATTGGAGTGGTATCAGGAA TTCAAGCCTAACTCAAAGACTATCTGTCCTCCAAACTTCTATCAAAGGGGCAGGTTTACA TACACCCACGTTGCATAAAATCATATTCCATCCAGCCACAGGCCTCTGCCTCCTAAAAGT TGGAACCCGTGGCCCTTTGAAGTTAGGTCCATGCTCTCAGACTCAAGGCTGGACCTATTC ATCCACAAAGGTCCTATTGCTGAATGAAATAGA
3' Flanking Sequence	TTCTGCATACAAGCTGATCAACTGAATAAGCCGGCAGTATTGGGAATACCGTGCACCACC CCGAATTCGCAATGGGAGACCATTTCGGATTCCnAGATGCACCTTCAATCTAAGACCACG GATGGTACTGAAGTTTGCCTGGATGTAGACTCCGACAAAACCATTGTCACAAATGCCTGC AAATGCTTAAGCGGAGACAGTTCGTGCGACCCCGCAAGCCAGTGGTTCAAAGTCGTGGAC AGCTTGATAAATTCGACGCCATCGAAGAAAGTTTGTAAGCGTAGGAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 334

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	57.22	JPsnpHou00127	View

Sequence

>JPsnpHou00127 ID=JPsnpHou00127; Name=JPsnpHou00127; organism=Pyrus pyrifolia; type=genetic_marker; length=622bp
TGAACTTGATGTGGATTTTGCTCAGTGGAGCCTGGTTGGGAGTTATTATT
TAAGGCAAGGGGTGACGGGTATGGAAGAGTATTATGGAATCTTGAACTCG
GATTGGAGTGGTATCAGGAATTCAAGCCTAACTCAAAGACTATCTGTCCT
CCAAACTTCTATCAAAGGGGCAGGTTTACATACACCCACGTTGCATAAAA
TCATATTCCATCCAGCCACAGGCCTCTGCCTCCTAAAAGTTGGAACCCGT
GGCCCTTTGAAGTTAGGTCCATGCTCTCAGACTCAAGGCTGGACCTATTC
ATCCACAAAGGTCCTATTGCTGAATGAAATAGAwTTCTGCATACAAGCTG
ATCAACTGAATAAGCCGGCAGTATTGGGAATACCGTGCACCACCCCGAAT
TCGCAATGGGAGACCATTTCGGATTCCnAGATGCACCTTCAATCTAAGAC
CACGGATGGTACTGAAGTTTGCCTGGATGTAGACTCCGACAAAACCATTG
TCACAAATGCCTGCAAATGCTTAAGCGGAGACAGTTCGTGCGACCCCGCA
AGCCAGTGGTTCAAAGTCGTGGACAGCTTGATAAATTCGACGCCATCGAA
GAAAGTTTGTAAGCGTAGGAAA