JPsnpHou00146, JPsnpHou00146 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00146
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	TAGTCCCTTGTAGATGCTCTAAGAGACTGGAAAAAATTGCACAATTCATTCCAGAGACTG TAAGCAAACGATTGACAAGAGACACAATACCTGTGTGACAATCAATGTAAATGCGACATA TGCAGCAACTGATAGTGAAGTTATCCATGCAAAAGGTGCTCCAAATTTGTAAGCCAGTAT ACCTGAAACCATAGATATCTGGAAGGGTACATGTCAAATCAGTTGAATTTGTTCAGAAAC TTAGTAATGTAGTTCTGTCATATATACGAAGCGAGTGGAACCTCAACCTTCGTACAAATA ACAGCACAAACTCCAGTGTCTTTATACATG
3' Flanking Sequence	CAACAAGCTTGACAATAACCAAAGGTACAGATCATACCTCTAAGATGGTAGGTACAACGT TGAACACCATAGATGAGAGAATAAAATTTATCGCACGGCTACCACGGTCAATTATTCTAT TTAGTGCACCGGTTTCTCGACTGAAATTACATTAGACAAGGGATAACGCAATTGTAAGCA TGCAACTAATAGCTCAAAATATCAACTTTATTGAAAAGCTGTTATTATAAACTAAAGCAC AATATCTCCCCTAAGGACAACTAAATTCTCACCCCTCCTCTACAACTAATTCATACATTC TT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 331

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	96.99	JPsnpHou00146	View

Sequence

>JPsnpHou00146 ID=JPsnpHou00146; Name=JPsnpHou00146; organism=Pyrus pyrifolia; type=genetic_marker; length=633bp
TAGTCCCTTGTAGATGCTCTAAGAGACTGGAAAAAATTGCACAATTCATT
CCAGAGACTGTAAGCAAACGATTGACAAGAGACACAATACCTGTGTGACA
ATCAATGTAAATGCGACATATGCAGCAACTGATAGTGAAGTTATCCATGC
AAAAGGTGCTCCAAATTTGTAAGCCAGTATACCTGAAACCATAGATATCT
GGAAGGGTACATGTCAAATCAGTTGAATTTGTTCAGAAACTTAGTAATGT
AGTTCTGTCATATATACGAAGCGAGTGGAACCTCAACCTTCGTACAAATA
ACAGCACAAACTCCAGTGTCTTTATACATGkCAACAAGCTTGACAATAAC
CAAAGGTACAGATCATACCTCTAAGATGGTAGGTACAACGTTGAACACCA
TAGATGAGAGAATAAAATTTATCGCACGGCTACCACGGTCAATTATTCTA
TTTAGTGCACCGGTTTCTCGACTGAAATTACATTAGACAAGGGATAACGC
AATTGTAAGCATGCAACTAATAGCTCAAAATATCAACTTTATTGAAAAGC
TGTTATTATAAACTAAAGCACAATATCTCCCCTAAGGACAACTAAATTCT
CACCCCTCCTCTACAACTAATTCATACATTCTT