JPsnpHou00418, JPsnpHou00418 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00418
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	GAAAAGATGGGAAAATAGAGGCCAAGGAGGGTGACGACGCCGCCGCTGCTCCACCGCCTC CGCCGCCACCTCAAGAAATTGTGCTCAAAGTTTATATGCATTGTGAAGGGTGTGCTCGCA AGGTGAAGCGGTGCCTCAAAGGATTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAAA CTCACAAGGTGGTTGTGAAGGGAGATAAGGCTGATCCAATTAAGGTTCTTGAAAGAGTTC AGAGGAAGAGCCACCGGCAGGTGGAGCTGGTGTCTCCAATCCCAAAACCGCCGACGGAGG AGGAGAAGAAGGCGGAGGAGAAAGAGAA
3' Flanking Sequence	CCCAAGCCAGAAGAAAAGAAAGAGGAGCCTCAAGTCATCACGGTGGTGCTGAAAGTTCAC ATGCATTGTGACGCCTGTGCACAAGAAATCAAGAAACGCATTCTGAGAATGAAAGGAGTG GAATCTGCCGAAGCAGATCTTAAGAGCTCAGAGGTGACAGTGAAGGGTGTGTTTGATCCG GCTAAGCTAATTGATTATGTACGCAAAAGAACCGGGAAGCAAGCGGCGATCGTGAAGCAA GAACCGGAGAAGAAAGAGAAAGAAGAAGCCAAAGAAGCCAAAGATGAGAAGAAAGGTGGT GAGGAAGGTGATAGACAAAGAGAAGAAAGGAAAAGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 329

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	114.27	JPsnpHou00418	View

Sequence

>JPsnpHou00418 ID=JPsnpHou00418; Name=JPsnpHou00418; organism=Pyrus pyrifolia; type=genetic_marker; length=665bp
GAAAAGATGGGAAAATAGAGGCCAAGGAGGGTGACGACGCCGCCGCTGCT
CCACCGCCTCCGCCGCCACCTCAAGAAATTGTGCTCAAAGTTTATATGCA
TTGTGAAGGGTGTGCTCGCAAGGTGAAGCGGTGCCTCAAAGGATTTCAAG
GGGTGGAAGATGTGAGCACAGATTGCAAAACTCACAAGGTGGTTGTGAAG
GGAGATAAGGCTGATCCAATTAAGGTTCTTGAAAGAGTTCAGAGGAAGAG
CCACCGGCAGGTGGAGCTGGTGTCTCCAATCCCAAAACCGCCGACGGAGG
AGGAGAAGAAGGCGGAGGAGAAAGAGAAsCCCAAGCCAGAAGAAAAGAAA
GAGGAGCCTCAAGTCATCACGGTGGTGCTGAAAGTTCACATGCATTGTGA
CGCCTGTGCACAAGAAATCAAGAAACGCATTCTGAGAATGAAAGGAGTGG
AATCTGCCGAAGCAGATCTTAAGAGCTCAGAGGTGACAGTGAAGGGTGTG
TTTGATCCGGCTAAGCTAATTGATTATGTACGCAAAAGAACCGGGAAGCA
AGCGGCGATCGTGAAGCAAGAACCGGAGAAGAAAGAGAAAGAAGAAGCCA
AAGAAGCCAAAGATGAGAAGAAAGGTGGTGAGGAAGGTGATAGACAAAGA
GAAGAAAGGAAAAGA