JPsnpHou00259, JPsnpHou00259 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00259
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	AAACTGTGTAGAATTCAACGGTTTGGTGAAGATGTCTGCTGGTTGATCACTTGTTCGTAT GTATGCCGTACGAATCATTCCCTCTTGAATCTTCTCTCTTACCAAATGACAATCAATCTC TATGTGCTTTGTCCTTTCATGAAATACCGGGTTTGAAGCAATGTATATGGCTGCTTGGTT ATCACAGAATAACATGACTAGTTGTGAATGACTCACCTTTAAATCTCTCAAAATGTTCTT TAACCACGTGATCTCACAACATGTGGCTGCCATGGAACGGTACTCGGCTTCAGCACTGGA ACGAGAGACAGTAGTTTGCTTCTT
3' Flanking Sequence	GTTTTCCAGGATATCGGTGCTTGACCCAGTTGAATGTAATAACCTGTTATTGATCTTCTT GTGTCCTTGCACCTGGCCCAATCAGCGTCACAGAATGCACTTAACTGCAAGGATCCCTTG GATGGCAGCAATATACCTTGTCCCGGTGAACTCTTGATGTATCTGAGAACTTTGTGTGCT GCCTCAAGGTGTGGTTGTCTAGGCTTGTCCATAAACTGGCTTAACATGTGCACAGCATAA GCTAAGTCCGGCCTGGTTATGGTTAGGTAGATCAACCTACCCACAAGTCTTCTATATGAT GAAGCATCAATAAGAAGTTCTCCTTCCATCTGTGTAAGAGAAACATTTGATTCTACAGGA AACCGTGAAGGTTTGGCACCCAAAAATTCCCGCATCATCTAAGAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 325

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	128.31	JPsnpHou00259	View

Sequence

>JPsnpHou00259 ID=JPsnpHou00259; Name=JPsnpHou00259; organism=Pyrus pyrifolia; type=genetic_marker; length=730bp
AAACTGTGTAGAATTCAACGGTTTGGTGAAGATGTCTGCTGGTTGATCAC
TTGTTCGTATGTATGCCGTACGAATCATTCCCTCTTGAATCTTCTCTCTT
ACCAAATGACAATCAATCTCTATGTGCTTTGTCCTTTCATGAAATACCGG
GTTTGAAGCAATGTATATGGCTGCTTGGTTATCACAGAATAACATGACTA
GTTGTGAATGACTCACCTTTAAATCTCTCAAAATGTTCTTTAACCACGTG
ATCTCACAACATGTGGCTGCCATGGAACGGTACTCGGCTTCAGCACTGGA
ACGAGAGACAGTAGTTTGCTTCTTwGTTTTCCAGGATATCGGTGCTTGAC
CCAGTTGAATGTAATAACCTGTTATTGATCTTCTTGTGTCCTTGCACCTG
GCCCAATCAGCGTCACAGAATGCACTTAACTGCAAGGATCCCTTGGATGG
CAGCAATATACCTTGTCCCGGTGAACTCTTGATGTATCTGAGAACTTTGT
GTGCTGCCTCAAGGTGTGGTTGTCTAGGCTTGTCCATAAACTGGCTTAAC
ATGTGCACAGCATAAGCTAAGTCCGGCCTGGTTATGGTTAGGTAGATCAA
CCTACCCACAAGTCTTCTATATGATGAAGCATCAATAAGAAGTTCTCCTT
CCATCTGTGTAAGAGAAACATTTGATTCTACAGGAAACCGTGAAGGTTTG
GCACCCAAAAATTCCCGCATCATCTAAGAT