JPsnpHou00265, JPsnpHou00265 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00265
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CCTCATCTCCCTTCTTTGTGCCCTTTACAGTGGCTGCCATTGTCAACCTGGCTGCCTTTG CTTGGGGTCATGTAAAGATTTTCCGAGATGGCGGTAGCTTGGAAGGATTGTTTGTGCAAA TGTTTATAGCTGGATTTGGCATAGTGAATAGCGTACCAATTTATGAAGCCATGATCAGTA GGAATGATAAGGGAAAAATTCCTACAAAAACTAGTCTGGTTTCAACAATTCTTGCATTTG CTCTTTACGCAGTGGTTTATGTCACTCTGAGGAACTGATGATGATCACACCCTCAAAAGT GTATTTACCCTCAGGGGTCTA
3' Flanking Sequence	GGCAGTTTTGTGCTTTCTCTGCCCCACAGATTTCTTAGTGTTCTACTATCTACTCCACCA ATCTTCTTTTGCAATTTGCAAAATAAAATTTGTATTTTGGACCACTTGTCGTCCATTGTG TTAGGTTTCCTTTAAGTAGGCCATGCATTGTTCAAAGTTTATGGTGAATGTATTATATAT TAGACTAATATTTATTAGAAACGATGAAAAACTTATATnAACGCAnGATGAATTTGATAA TACACATTTTATAATAGTCTGATAGTTTAAGAGAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 322

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	106.74	JPsnpHou00265	View

Sequence

>JPsnpHou00265 ID=JPsnpHou00265; Name=JPsnpHou00265; organism=Pyrus pyrifolia; type=genetic_marker; length=598bp
CCTCATCTCCCTTCTTTGTGCCCTTTACAGTGGCTGCCATTGTCAACCTG
GCTGCCTTTGCTTGGGGTCATGTAAAGATTTTCCGAGATGGCGGTAGCTT
GGAAGGATTGTTTGTGCAAATGTTTATAGCTGGATTTGGCATAGTGAATA
GCGTACCAATTTATGAAGCCATGATCAGTAGGAATGATAAGGGAAAAATT
CCTACAAAAACTAGTCTGGTTTCAACAATTCTTGCATTTGCTCTTTACGC
AGTGGTTTATGTCACTCTGAGGAACTGATGATGATCACACCCTCAAAAGT
GTATTTACCCTCAGGGGTCTArGGCAGTTTTGTGCTTTCTCTGCCCCACA
GATTTCTTAGTGTTCTACTATCTACTCCACCAATCTTCTTTTGCAATTTG
CAAAATAAAATTTGTATTTTGGACCACTTGTCGTCCATTGTGTTAGGTTT
CCTTTAAGTAGGCCATGCATTGTTCAAAGTTTATGGTGAATGTATTATAT
ATTAGACTAATATTTATTAGAAACGATGAAAAACTTATATnAACGCAnGA
TGAATTTGATAATACACATTTTATAATAGTCTGATAGTTTAAGAGAAC