JPsnpHou00294, JPsnpHou00294 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00294
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	GTGAAAGTGTGTGAGGGTGCAAATGGGGTACCAGACTCGGCCGAGCTGGGAAAGGCAATT GCTGAGTCAATGAGTGGGGAAACACCTGAAAAGGTGAGAGCGAAGGAACTGAGGAACAAG GCAGTTGCGGCTGTGGGAGCTGGTGGGAGCTCTTCAAAGGATTTGGACGAGCTTGTGAAA GAGTTGGGTCAAATTAAAGTGAGGTGAACAGACTAGCCTCGATTTTGGAGTTCCAATAGC AGCTCCGTAACACAAATAAGAATTAGGGAATAAAATAATGGTTAGTTTCCAATAACGTTT TATAGATTTCGTATCAAAGTC
3' Flanking Sequence	AGGAGAATGTTCAACTTTTCTGTAAAATAAATATCATTCAGATCACATTGAATGAATTTG AATCGTATGTACTATGGTGTTCTTGCCTATGAGGCAGGAGAGCATGATAATAAATTTACC TTAGCTGCGTCTATTTCGATTGTCCTGAAAAAATGGAAAGTAAGAAATTAAAGAGAAGCA GAAGCAAATGGAGTGGTGCATTCTTTGAAAACTACAAAAAAAAAAAAAANAAAAAACCGA AAGACTAGACCGAAGGACACAACGAAGGGGAAGTAAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 322

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	39.23	JPsnpHou00294	View

Sequence

>JPsnpHou00294 ID=JPsnpHou00294; Name=JPsnpHou00294; organism=Pyrus pyrifolia; type=genetic_marker; length=600bp
GTGAAAGTGTGTGAGGGTGCAAATGGGGTACCAGACTCGGCCGAGCTGGG
AAAGGCAATTGCTGAGTCAATGAGTGGGGAAACACCTGAAAAGGTGAGAG
CGAAGGAACTGAGGAACAAGGCAGTTGCGGCTGTGGGAGCTGGTGGGAGC
TCTTCAAAGGATTTGGACGAGCTTGTGAAAGAGTTGGGTCAAATTAAAGT
GAGGTGAACAGACTAGCCTCGATTTTGGAGTTCCAATAGCAGCTCCGTAA
CACAAATAAGAATTAGGGAATAAAATAATGGTTAGTTTCCAATAACGTTT
TATAGATTTCGTATCAAAGTCsAGGAGAATGTTCAACTTTTCTGTAAAAT
AAATATCATTCAGATCACATTGAATGAATTTGAATCGTATGTACTATGGT
GTTCTTGCCTATGAGGCAGGAGAGCATGATAATAAATTTACCTTAGCTGC
GTCTATTTCGATTGTCCTGAAAAAATGGAAAGTAAGAAATTAAAGAGAAG
CAGAAGCAAATGGAGTGGTGCATTCTTTGAAAACTACAAAAAAAAAAAAA
ANAAAAAACCGAAAGACTAGACCGAAGGACACAACGAAGGGGAAGTAAGG