JPsnpHou00370, JPsnpHou00370 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00370
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TTGGTGGTGGAGTCTGTGATGAGATGGCGGTTATCGCGGCGGTGGCGTATTCTTGGAGGA TGTTGTGCCCCCTGAAAAGAATCTGTACAATCAAACTTGGACTGAAGAAGAAGTTAAAGA AGATGCAAATGCGGACGCGGATGGCCAAATACAGATATTCGATTATTTCAGTAACCTCGA CTTAAAGTTGGATAGTGAGGATACATACAGCCTTTTGCTATACGGTGGTGGTGCCTTGTT TGCCCTGTGGTTAGCATCAGCTGTTGTTGGAGCTATTGATTCnATTCCGTTGTTCCCGAA GTTGCTGGAAGTCGT
3' Flanking Sequence	GGTCTTGGATACACCGTCTGGTTTAGCTCTCGTTATCTGATATTCAAGAAAAACAGAGAT GAGTTGGTTGCTAAAGTTCAAGTCCTTAAACAGCAGGTTCTGGGTTCGGACGATGACTGA TATGGAGGACTTGTTACGTTGTGCAGATTGTTGCTGCATAAAACCATGAATGTAGAGTTG AAGGAAAAATATATAGGGATTTCTTTTAGCCAATATTAGGAATAGTCACTTTATTAATAT AAGTTCAGTCTCTTAAGTTAGGGATCATTTTATTATCAGATAAGGTTTACAGTAAAAATT AAATTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 316

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	141.58	JPsnpHou00370	View

Sequence

>JPsnpHou00370 ID=JPsnpHou00370; Name=JPsnpHou00370; organism=Pyrus pyrifolia; type=genetic_marker; length=622bp
TTGGTGGTGGAGTCTGTGATGAGATGGCGGTTATCGCGGCGGTGGCGTAT
TCTTGGAGGATGTTGTGCCCCCTGAAAAGAATCTGTACAATCAAACTTGG
ACTGAAGAAGAAGTTAAAGAAGATGCAAATGCGGACGCGGATGGCCAAAT
ACAGATATTCGATTATTTCAGTAACCTCGACTTAAAGTTGGATAGTGAGG
ATACATACAGCCTTTTGCTATACGGTGGTGGTGCCTTGTTTGCCCTGTGG
TTAGCATCAGCTGTTGTTGGAGCTATTGATTCnATTCCGTTGTTCCCGAA
GTTGCTGGAAGTCGTyGGTCTTGGATACACCGTCTGGTTTAGCTCTCGTT
ATCTGATATTCAAGAAAAACAGAGATGAGTTGGTTGCTAAAGTTCAAGTC
CTTAAACAGCAGGTTCTGGGTTCGGACGATGACTGATATGGAGGACTTGT
TACGTTGTGCAGATTGTTGCTGCATAAAACCATGAATGTAGAGTTGAAGG
AAAAATATATAGGGATTTCTTTTAGCCAATATTAGGAATAGTCACTTTAT
TAATATAAGTTCAGTCTCTTAAGTTAGGGATCATTTTATTATCAGATAAG
GTTTACAGTAAAAATTAAATTT