JPsnpHou00655, JPsnpHou00655 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00655
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAATAAGTGGGGAACACGCATCACACCTGTGATACAATGGCCAGACAAGTCTTTTACACT AGGTCTTTCACAAGCCTTGGCTTGGCAGCGATCTGGTCTCATGGTGAGGCCTACAATACA GTTCAGTTTATGTCCCACTTTTGGCGGAAGCAATCCTGGTTTGCGGGCAGAGCTCATTCA CTCAGTGAAGGAGCAGCTGAATCTGATATGTGGTTGTGCATTCACAGCACATCCTTCTGC TTTTGCTTCAGTATCGGTTGGCAGATCCAAGTGGAATGGAAATGTCGGGGACTCGGGGAT CGTATTAAGAGT
3' Flanking Sequence	GATACTCCTCTTTCCAATGTTGGTCGACCTTACTTCTCGATTCAGTTAAATAATGTTCTC GAATTTTGATTGCATAGGCCCCATGGAGTGTGCAAAATGCAAGTGTATATATTCAGTCTC AAGCTCTGAAAACAGTACCACATGTGAATATGTGAATCATGTTCTACTGCTAATTATACC AATGTTACCTGTTTCACTGCTTATTTTACTTTTAACAAAAAAAAAAANAAAAACTAAGAG ACTACGACAAGACACACGAGGGAGTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 313

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	218.6	JPsnpHou00655	View

Sequence

>JPsnpHou00655 ID=JPsnpHou00655; Name=JPsnpHou00655; organism=Pyrus pyrifolia; type=genetic_marker; length=579bp
GAATAAGTGGGGAACACGCATCACACCTGTGATACAATGGCCAGACAAGT
CTTTTACACTAGGTCTTTCACAAGCCTTGGCTTGGCAGCGATCTGGTCTC
ATGGTGAGGCCTACAATACAGTTCAGTTTATGTCCCACTTTTGGCGGAAG
CAATCCTGGTTTGCGGGCAGAGCTCATTCACTCAGTGAAGGAGCAGCTGA
ATCTGATATGTGGTTGTGCATTCACAGCACATCCTTCTGCTTTTGCTTCA
GTATCGGTTGGCAGATCCAAGTGGAATGGAAATGTCGGGGACTCGGGGAT
CGTATTAAGAGTrGATACTCCTCTTTCCAATGTTGGTCGACCTTACTTCT
CGATTCAGTTAAATAATGTTCTCGAATTTTGATTGCATAGGCCCCATGGA
GTGTGCAAAATGCAAGTGTATATATTCAGTCTCAAGCTCTGAAAACAGTA
CCACATGTGAATATGTGAATCATGTTCTACTGCTAATTATACCAATGTTA
CCTGTTTCACTGCTTATTTTACTTTTAACAAAAAAAAAAANAAAAACTAA
GAGACTACGACAAGACACACGAGGGAGTA