JPsnpHou00263, JPsnpHou00263 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00263
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GCTAAATATGCTCCTGAAAGAGATGCTTTGGTCTGGAAAATCAAGTCTTTTCCTGGTAAT AAGGAATACATGTTGAGATCTGAGTTCACGCTTCCTAGTATAACCGCTGAAGAAGCGGTT CCTGAAAGAAGAGCTCCTATTCGGGTGAAGTTTGAGATACCGTATTTTACTGTATCCGGA ATTCAGGTCCGATACCTAAAAATCATTGAGAAAAGTGGGTACCAGGCTCTTCCATGGGTG AGATACATAACAATGGCTGGCGAATACGAACTGAGACTAATGTAAATGCATACGTATCTT GCTGCTTTCG
3' Flanking Sequence	TCGCGTAAATAGTTTACATTCGTGCGGAGAGTTTTCTTTCGATACTTTCGCTGTTACCnG TAGAGTCTCGTCTCCGGTGATCTTTCTTCCAAAGGACACCCTACAAGTTTCTTCAATCAT TTTTTGTGTTTTGTCTATCTTTTTTGTTATAATCAATAGGAGATTTTGTTTCAGACCCAC AAAGTAGATTGTGCGTCGTGGCGAATAGTTGTGTTTTTGACTCGGTAATTTTATTGTTGC CATGCTTGAAATATAGC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 311

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	137.46	JPsnpHou00263	View

Sequence

>JPsnpHou00263 ID=JPsnpHou00263; Name=JPsnpHou00263; organism=Pyrus pyrifolia; type=genetic_marker; length=568bp
GCTAAATATGCTCCTGAAAGAGATGCTTTGGTCTGGAAAATCAAGTCTTT
TCCTGGTAATAAGGAATACATGTTGAGATCTGAGTTCACGCTTCCTAGTA
TAACCGCTGAAGAAGCGGTTCCTGAAAGAAGAGCTCCTATTCGGGTGAAG
TTTGAGATACCGTATTTTACTGTATCCGGAATTCAGGTCCGATACCTAAA
AATCATTGAGAAAAGTGGGTACCAGGCTCTTCCATGGGTGAGATACATAA
CAATGGCTGGCGAATACGAACTGAGACTAATGTAAATGCATACGTATCTT
GCTGCTTTCGrTCGCGTAAATAGTTTACATTCGTGCGGAGAGTTTTCTTT
CGATACTTTCGCTGTTACCnGTAGAGTCTCGTCTCCGGTGATCTTTCTTC
CAAAGGACACCCTACAAGTTTCTTCAATCATTTTTTGTGTTTTGTCTATC
TTTTTTGTTATAATCAATAGGAGATTTTGTTTCAGACCCACAAAGTAGAT
TGTGCGTCGTGGCGAATAGTTGTGTTTTTGACTCGGTAATTTTATTGTTG
CCATGCTTGAAATATAGC