JPsnpHou00593, JPsnpHou00593 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00593
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CAGGAACAGCATTCTTATAAAGATCCCATCACAGAGTTTTTGACCTGCGTTTATGTTAAT TATGACTTTGATGGTGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATCTTGAATGAT CCTTTCCTTGGAAAACGAGTAGAAGAAGGGAATTTCTCTACTGTACCACTGAGGGATGAG TTCCTTGAAAATGCTCGTTTATTTATCTTTGAGACATACTGTCGTATACATCAGCGCATT GACATGGGAGTGCTTGCAGAGAAATTAAACTTGAATTATGAGGAGGCTGAAAGATGGATT GTGAAT
3' Flanking Sequence	TAATTCGGAGCTCAAAGCTTGATGCGAAGATTGACTCGGAGTCAGGAACTGTTATCATGG AACCTAACCATCCGAATGTGTATGAGCAACTGATAGACCACACCAAGGCATTATCGGGGC GTACTTACAAGTTGGTTGGTCAGATCCTGGAACATGCTCAGGCACAGATTGCTCGTTGAA TTTGGCGGTGAATTTTATCCGAAATTATTAGTTTCATTTCCTAGATATCCAAAAATTCTC AGAATTTTATCTGGGTGACGAGAAAAGTTTTTAAATTTTAGTCAATGTAGCTGTGTTCAG GAACATATCGAGATTTGTTGGATCAAAATGTAATTTAATTTGGAGCTTGTGCCTTTGGAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 307

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	62.74	JPsnpHou00593	View

Sequence

>JPsnpHou00593 ID=JPsnpHou00593; Name=JPsnpHou00593; organism=Pyrus pyrifolia; type=genetic_marker; length=667bp
CAGGAACAGCATTCTTATAAAGATCCCATCACAGAGTTTTTGACCTGCGT
TTATGTTAATTATGACTTTGATGGTGCACAAAAGAAGATGAGGGAGTGTG
AAGAAGTAATCTTGAATGATCCTTTCCTTGGAAAACGAGTAGAAGAAGGG
AATTTCTCTACTGTACCACTGAGGGATGAGTTCCTTGAAAATGCTCGTTT
ATTTATCTTTGAGACATACTGTCGTATACATCAGCGCATTGACATGGGAG
TGCTTGCAGAGAAATTAAACTTGAATTATGAGGAGGCTGAAAGATGGATT
GTGAATyTAATTCGGAGCTCAAAGCTTGATGCGAAGATTGACTCGGAGTC
AGGAACTGTTATCATGGAACCTAACCATCCGAATGTGTATGAGCAACTGA
TAGACCACACCAAGGCATTATCGGGGCGTACTTACAAGTTGGTTGGTCAG
ATCCTGGAACATGCTCAGGCACAGATTGCTCGTTGAATTTGGCGGTGAAT
TTTATCCGAAATTATTAGTTTCATTTCCTAGATATCCAAAAATTCTCAGA
ATTTTATCTGGGTGACGAGAAAAGTTTTTAAATTTTAGTCAATGTAGCTG
TGTTCAGGAACATATCGAGATTTGTTGGATCAAAATGTAATTTAATTTGG
AGCTTGTGCCTTTGGAG