JPsnpHou00141, JPsnpHou00141 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00141
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTAGGATCGGCATCGCGCCGTCGTCTGGGTTCGTGCACGGAGGGGTCGCGTGTGGTGGGT TGCTCTTCGACACGCCGGAAACCCGCCGGGGGGTTCCCGCCGGTGAGGTTTCGGTTTCTT CTTCGAGTTCGTCGTCGATCGGGAAGAACAGCGACGATGAATCGGAGAGATACGACGGCG GCGAAAATGATGAGGCTCAGAGCTCGTATAAAGGTCCGTTGGATATGATGAACGAGTTGG AGGAAGTTTTACCCATGAGGAGAGGGATCTCAAAGCACTACAACTATAAATCCAAGTCCT TCAC
3' Flanking Sequence	AGTCTAGTAGAAGCTTCATCTTCTTCCAACATCAAGGAGCTTGCAAAACCAGACAATGCC TACACCCGAAAACGCAGGAACCTCCTTGCCTCCAACCACATGTGGGAnAAGAACCGAACC TCCTTCCCGCTGAGAAGCAATGGCnGCGGAATTTCAAAGAGGCCGATTCCGTCCAGTCGA AGCGCATTGGCTCTGGCTGTGAAGCTGGGCAGCTGnTCGGAAAGCAGTACTAGTAGCACA AGTGAGGAATCCAATTCGAGCTCAAATCCGTCGTCGCCGCGGCCACCTCTCCCACCGGGT AACGCnTGTGCACTAGGAAGTTATGCAGCTTGGAGATCGTATTCATTGGCTGATCTGCAA GAATGnACCGnTGCTACGACTGTAAATGCTTCACGATTCTCGGCGGCTTCCACGACGAAA CCGAACGTGTAGAAACCCTAACTTGAATCTTGCCAGTGTTCCTGCCTGCATCGAGCTGAG TTTGCGATGGTGTTGTCAGGAAATATGGTTCTTCTAGTCTAATTAATCTTTGATTAAAAG TGTAAGGGTAGAAGAATTTCAAAAATCTGATGTTATTTGTACATATGTTGAATGAGTAAA ATAACCCCATATTACAACTGATTTG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 305

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	62.61	JPsnpHou00141	View

Sequence

>JPsnpHou00141 ID=JPsnpHou00141; Name=JPsnpHou00141; organism=Pyrus pyrifolia; type=genetic_marker; length=930bp
CTAGGATCGGCATCGCGCCGTCGTCTGGGTTCGTGCACGGAGGGGTCGCG
TGTGGTGGGTTGCTCTTCGACACGCCGGAAACCCGCCGGGGGGTTCCCGC
CGGTGAGGTTTCGGTTTCTTCTTCGAGTTCGTCGTCGATCGGGAAGAACA
GCGACGATGAATCGGAGAGATACGACGGCGGCGAAAATGATGAGGCTCAG
AGCTCGTATAAAGGTCCGTTGGATATGATGAACGAGTTGGAGGAAGTTTT
ACCCATGAGGAGAGGGATCTCAAAGCACTACAACTATAAATCCAAGTCCT
TCACrAGTCTAGTAGAAGCTTCATCTTCTTCCAACATCAAGGAGCTTGCA
AAACCAGACAATGCCTACACCCGAAAACGCAGGAACCTCCTTGCCTCCAA
CCACATGTGGGAnAAGAACCGAACCTCCTTCCCGCTGAGAAGCAATGGCn
GCGGAATTTCAAAGAGGCCGATTCCGTCCAGTCGAAGCGCATTGGCTCTG
GCTGTGAAGCTGGGCAGCTGnTCGGAAAGCAGTACTAGTAGCACAAGTGA
GGAATCCAATTCGAGCTCAAATCCGTCGTCGCCGCGGCCACCTCTCCCAC
CGGGTAACGCnTGTGCACTAGGAAGTTATGCAGCTTGGAGATCGTATTCA
TTGGCTGATCTGCAAGAATGnACCGnTGCTACGACTGTAAATGCTTCACG
ATTCTCGGCGGCTTCCACGACGAAACCGAACGTGTAGAAACCCTAACTTG
AATCTTGCCAGTGTTCCTGCCTGCATCGAGCTGAGTTTGCGATGGTGTTG
TCAGGAAATATGGTTCTTCTAGTCTAATTAATCTTTGATTAAAAGTGTAA
GGGTAGAAGAATTTCAAAAATCTGATGTTATTTGTACATATGTTGAATGA
GTAAAATAACCCCATATTACAACTGATTTG