JPsnpHou00641, JPsnpHou00641 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00641
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CAGCACTAAAAGACTTGAAGTATGGGTTATGAATGTAGTCCCAGTTGACTCTCGTGACAC ACTTCCAATAATCTATGAGCGCGGTTTCATTGGGATATATCATGATTGGTGTGAATCGTT CAGTACCTACCCCAGATCTTATGATCTTTTACATGCTGATCATCTATTCTCCGTCCTTAA GAAAAGATGCAGCTTAGTGGCAGCGATTGCAGAAGTTGATAGGATACTGAGGCCAGAAGG GAAACTAATTGTATGGGACAATGCTGAAACCTTAAATGAGATTGAG
3' Flanking Sequence	GTCTGGCTAAATCTCTGCAATGGAACATCCGATTTACTTACTCGAAnGACAATGAGGGTT TGCTGTGCATTCAGAAGACGTTTTGGCGTCCTGCAGACAAGGAGAAAATTTTGTCAGCCA TTGCTTAAATGCTTCAATCTGCATCTTTGACGGCCTAAGGCTTAGTCAATACTGGTATTG TAGCCCGTTAAGTATTGTTTTGTTTGCTTAGCCATTAACGTATGAGGATCAAGCATCTTT AAACTAAAGAAATTCGTTAACGTGTAAATTTCACGTAATTTGTCATTCTTTCAGAGTCCC CCAGAAGCTCTCTCTAAATATTCTTGCAAAGTGAACTGTCGAAAAGGGGGATTATTTGGC TTTTGTATCTTTATATTTCGCGGACAAATGGAAACAGATACTCGAAGGCATTATTGTAGT CTTTGACATGTTACTGCTCTTTTCTTACTACTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 287

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Sequence

>JPsnpHou00641 ID=JPsnpHou00641; Name=JPsnpHou00641; organism=Pyrus pyrifolia; type=genetic_marker; length=740bp
CAGCACTAAAAGACTTGAAGTATGGGTTATGAATGTAGTCCCAGTTGACT
CTCGTGACACACTTCCAATAATCTATGAGCGCGGTTTCATTGGGATATAT
CATGATTGGTGTGAATCGTTCAGTACCTACCCCAGATCTTATGATCTTTT
ACATGCTGATCATCTATTCTCCGTCCTTAAGAAAAGATGCAGCTTAGTGG
CAGCGATTGCAGAAGTTGATAGGATACTGAGGCCAGAAGGGAAACTAATT
GTATGGGACAATGCTGAAACCTTAAATGAGATTGAGrGTCTGGCTAAATC
TCTGCAATGGAACATCCGATTTACTTACTCGAAnGACAATGAGGGTTTGC
TGTGCATTCAGAAGACGTTTTGGCGTCCTGCAGACAAGGAGAAAATTTTG
TCAGCCATTGCTTAAATGCTTCAATCTGCATCTTTGACGGCCTAAGGCTT
AGTCAATACTGGTATTGTAGCCCGTTAAGTATTGTTTTGTTTGCTTAGCC
ATTAACGTATGAGGATCAAGCATCTTTAAACTAAAGAAATTCGTTAACGT
GTAAATTTCACGTAATTTGTCATTCTTTCAGAGTCCCCCAGAAGCTCTCT
CTAAATATTCTTGCAAAGTGAACTGTCGAAAAGGGGGATTATTTGGCTTT
TGTATCTTTATATTTCGCGGACAAATGGAAACAGATACTCGAAGGCATTA
TTGTAGTCTTTGACATGTTACTGCTCTTTTCTTACTACTA