JPsnpHou00138, JPsnpHou00138 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00138
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGTTGATCTCGCGGCTGCTGTGACGGCAATTCATCAGTGCGTTCGGGACGGGCCGTTGGA TAAGGCTCGATTGGAGGTCTTTCAGAAGCAAATTGAGATCACCACGGCGGCTCGGGGCTC GGCCAATGTCATATACGCCTGGTGCGGAGTGTCGGGCAACGATGTGAAAGGCATTTTGAC ACATGGGTTTGGCGCACCCAGCAAGGTTTCTGGGCCGCAGTCGCATGGCATTGGTCTTCA TCTTTCGCATTTATCGGTGCCTTTTCTAAGTGCTGGGCAGTCGGAG
3' Flanking Sequence	GGGATGATAATGGCGAAAAATATGCTATTTTGTGCCGGGTTATACTAGGCAATGTTGAAA AAATTGAGGCAGGTTCTAAACAATGTTACCCTTCTGGTGTGGAATTCGATAACGGTGCAG ATGATCCTAAGAATCCCAAGTGGTATGTCATATGGTCTACCAACATGAATAGACATGTGC TTCCGGAGTGTGTTGTGAGTTACAAGTCGAATTACGTGCCAGCTCAATCGGTGCGAAGAG CATACCCTGTTGATATGTTAATTTCGAAGATTAAGAGCCATCTTCCTCCTTCTAAAGTTC AGGAACTTTCCTCTTTGGTATGCGAGTTGAAGGGTGGAAAGCTGGCCAGGGATGATTTCG TCAAACAGTGCAGATCAGTTACTGGAGAGCAATTGATGGCATCTGCTCTTAACGACTTGC GTCTCCAGAAGCAAGGTTCTTAGGTTTTGTTTTGCTAGGAGGCATATATAAATGTGTTGT CATGGTCTTTACAATTGATGGAACCATGTTTGACCGCTTCGTTAAAGTCCTACTAGGATT AGGGTGAAATGCCCAACCATACAAAAGAGCGAAAACTATGTGTGAAAATGCCCAACCATA TCATACATATAGCAAATATGCTTCCTGTTTAGTGTTTTACCAAAAAAAGGCAGTGTTCAT TGTCTGTTAGTACTTGTGTTTTCTTGGCATGTAATTCAACAAAGAGCGTTCCTACTATCT TTTGTACTTAGTAGTTACCCCTTTTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 287

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	223.46	JPsnpHou00138	View

Sequence

>JPsnpHou00138 ID=JPsnpHou00138; Name=JPsnpHou00138; organism=Pyrus pyrifolia; type=genetic_marker; length=1034bp
GGTTGATCTCGCGGCTGCTGTGACGGCAATTCATCAGTGCGTTCGGGACG
GGCCGTTGGATAAGGCTCGATTGGAGGTCTTTCAGAAGCAAATTGAGATC
ACCACGGCGGCTCGGGGCTCGGCCAATGTCATATACGCCTGGTGCGGAGT
GTCGGGCAACGATGTGAAAGGCATTTTGACACATGGGTTTGGCGCACCCA
GCAAGGTTTCTGGGCCGCAGTCGCATGGCATTGGTCTTCATCTTTCGCAT
TTATCGGTGCCTTTTCTAAGTGCTGGGCAGTCGGAGyGGGATGATAATGG
CGAAAAATATGCTATTTTGTGCCGGGTTATACTAGGCAATGTTGAAAAAA
TTGAGGCAGGTTCTAAACAATGTTACCCTTCTGGTGTGGAATTCGATAAC
GGTGCAGATGATCCTAAGAATCCCAAGTGGTATGTCATATGGTCTACCAA
CATGAATAGACATGTGCTTCCGGAGTGTGTTGTGAGTTACAAGTCGAATT
ACGTGCCAGCTCAATCGGTGCGAAGAGCATACCCTGTTGATATGTTAATT
TCGAAGATTAAGAGCCATCTTCCTCCTTCTAAAGTTCAGGAACTTTCCTC
TTTGGTATGCGAGTTGAAGGGTGGAAAGCTGGCCAGGGATGATTTCGTCA
AACAGTGCAGATCAGTTACTGGAGAGCAATTGATGGCATCTGCTCTTAAC
GACTTGCGTCTCCAGAAGCAAGGTTCTTAGGTTTTGTTTTGCTAGGAGGC
ATATATAAATGTGTTGTCATGGTCTTTACAATTGATGGAACCATGTTTGA
CCGCTTCGTTAAAGTCCTACTAGGATTAGGGTGAAATGCCCAACCATACA
AAAGAGCGAAAACTATGTGTGAAAATGCCCAACCATATCATACATATAGC
AAATATGCTTCCTGTTTAGTGTTTTACCAAAAAAAGGCAGTGTTCATTGT
CTGTTAGTACTTGTGTTTTCTTGGCATGTAATTCAACAAAGAGCGTTCCT
ACTATCTTTTGTACTTAGTAGTTACCCCTTTTAG