JPsnpHou00358, JPsnpHou00358 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00358
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AGCGAGGCTGGGGACTACCACTTTGACAATTTATCAAGGTTTGATTCCTTCAGCAGCAAC AGGCATGACGTTGGCTTTTCTTCCCAGCCTGAGAGGTTCTCGAGGTTCGATTCCATAAAT AGCACTAGAGATTTTGGGGGCCACACACGGTTCGACTCCATAAGCAGCAGCAAGGACTTT GGTCGGTTTGACTCCATGAGCAGCAGCAGGGACTTTGGTCATGGTCGCGAGCCGCAGCTC ACAAGGTTCGACTCCATAGACAGCACCAAAGATTTTGGCCAG
3' Flanking Sequence	GTGCATATTCTTTTGACGAGACAGATCCATTCGGCTCTTCTGGGCCATTTAAGGTCTCAT CAGAGAGTCAAACATCGAAGAAAGGATCTGATAACTGGAGCGCTTTCTAACGGGAAATCC ACTGTACCTCGTGAAAAAAGCCGAAAATTCGTTACTTGTTTTCTCCATTTTGTTTGAGGG TTGAGGGTTTGTTGATGGTAGCCAAATTTTTGTGTGATAAATTCTGTGTAAGTGTATGGC TTGGAAGAACCTGTATTGTTGTTTGTATGGCCTTGTATTATTTGATGACAGACCATTTAT ATTTGTTCAATACGGTGTACAATTTATTACTCTCATTTGATATGAAATAATTGACGAGAA ATAAAAAAAAAAAANAAAAAAACCGAAGACTAGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 283

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	26.12	JPsnpHou00358	View

Sequence

>JPsnpHou00358 ID=JPsnpHou00358; Name=JPsnpHou00358; organism=Pyrus pyrifolia; type=genetic_marker; length=677bp
AGCGAGGCTGGGGACTACCACTTTGACAATTTATCAAGGTTTGATTCCTT
CAGCAGCAACAGGCATGACGTTGGCTTTTCTTCCCAGCCTGAGAGGTTCT
CGAGGTTCGATTCCATAAATAGCACTAGAGATTTTGGGGGCCACACACGG
TTCGACTCCATAAGCAGCAGCAAGGACTTTGGTCGGTTTGACTCCATGAG
CAGCAGCAGGGACTTTGGTCATGGTCGCGAGCCGCAGCTCACAAGGTTCG
ACTCCATAGACAGCACCAAAGATTTTGGCCAGrGTGCATATTCTTTTGAC
GAGACAGATCCATTCGGCTCTTCTGGGCCATTTAAGGTCTCATCAGAGAG
TCAAACATCGAAGAAAGGATCTGATAACTGGAGCGCTTTCTAACGGGAAA
TCCACTGTACCTCGTGAAAAAAGCCGAAAATTCGTTACTTGTTTTCTCCA
TTTTGTTTGAGGGTTGAGGGTTTGTTGATGGTAGCCAAATTTTTGTGTGA
TAAATTCTGTGTAAGTGTATGGCTTGGAAGAACCTGTATTGTTGTTTGTA
TGGCCTTGTATTATTTGATGACAGACCATTTATATTTGTTCAATACGGTG
TACAATTTATTACTCTCATTTGATATGAAATAATTGACGAGAAATAAAAA
AAAAAAANAAAAAAACCGAAGACTAGA