JPsnpHou00425, JPsnpHou00425 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00425
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TCGGGTTCTGTGGAAGCGGATATAATCACTGGTACGATTCAAGAGTGCGAGAATCCAGCC ATTAGAGGAGAGGAGAAATATTGTGCTACCTCTTTGGAGTCCATGATTGACTTTAGCACT TCCAAGCTTGGAGGAGGAAATGTTCGAGCAATTTCGACAGAAGCCGGGAAAGGAGCCACT CTGCAGAAGTACACAATAGCTTCTGGAGTGAAGAAGTTGGCGGCGGATAAGTCCGTCGTG TGTCACAAGCAGAACTATCCCTATGCTGTTTTTTACTGCCAT
3' Flanking Sequence	CAACAAAAACAACCAGAGCTTATGTGGTGCCCCTTAAAGGTGCTGATGGGGTGAATGTTA AGGCAGTAGCAGTCTGCCACACAGACACATCAGATTGGAACCCTAAACATTTGGCCTTCC AAGTCCTCAAAGTCAAGCCGGGAACTGTTCCGGTCTGCCATTTCCTTCCCAGTGATCATG TTGTCTGGGTTCCAAACCAGAAATCTACATGATTTGACTGATCAAACCTTCAGTTCTACA TATGATGATGTGATCAGCTTAATTAGCATAGTTTGCGTGGCAACAGTTTAAATTAAATCG ACTGTCGATTACTTCTTATTGTCACTATGTATTTCAACCTATGTATAAACTCATAAATGA AnGCATGCTATCGTGTGGACTTGTACCAAAAGCATGCTATAGTGGACGTGCTCTACAACA TTCAGTAATAGTTATAnATGCTTTGACTCTGCGGTGCCAACTGTCCATTGGTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 283

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	29.36	JPsnpHou00425	View

Sequence

>JPsnpHou00425 ID=JPsnpHou00425; Name=JPsnpHou00425; organism=Pyrus pyrifolia; type=genetic_marker; length=756bp
TCGGGTTCTGTGGAAGCGGATATAATCACTGGTACGATTCAAGAGTGCGA
GAATCCAGCCATTAGAGGAGAGGAGAAATATTGTGCTACCTCTTTGGAGT
CCATGATTGACTTTAGCACTTCCAAGCTTGGAGGAGGAAATGTTCGAGCA
ATTTCGACAGAAGCCGGGAAAGGAGCCACTCTGCAGAAGTACACAATAGC
TTCTGGAGTGAAGAAGTTGGCGGCGGATAAGTCCGTCGTGTGTCACAAGC
AGAACTATCCCTATGCTGTTTTTTACTGCCATrCAACAAAAACAACCAGA
GCTTATGTGGTGCCCCTTAAAGGTGCTGATGGGGTGAATGTTAAGGCAGT
AGCAGTCTGCCACACAGACACATCAGATTGGAACCCTAAACATTTGGCCT
TCCAAGTCCTCAAAGTCAAGCCGGGAACTGTTCCGGTCTGCCATTTCCTT
CCCAGTGATCATGTTGTCTGGGTTCCAAACCAGAAATCTACATGATTTGA
CTGATCAAACCTTCAGTTCTACATATGATGATGTGATCAGCTTAATTAGC
ATAGTTTGCGTGGCAACAGTTTAAATTAAATCGACTGTCGATTACTTCTT
ATTGTCACTATGTATTTCAACCTATGTATAAACTCATAAATGAAnGCATG
CTATCGTGTGGACTTGTACCAAAAGCATGCTATAGTGGACGTGCTCTACA
ACATTCAGTAATAGTTATAnATGCTTTGACTCTGCGGTGCCAACTGTCCA
TTGGTT