JPsnpHou00069, JPsnpHou00069 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00069
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GAGAGAGAGAGAGCAGAGAGAAACAATGGTGAAGTTTCTGAAGCCAAACAAGGCGGTGAT CAACCTCCAGGGCCGCTACGCCGGGCGTAAGGCCGTCATCGTGCGCGCCTTCGACGAGGG CACCCGCGATCGTCCCTACGGCCACTGTTTGGTTGCGGGGATCAAGAAGTACCCCAGCAA GGTCATCCGCAAGGACTCCGCCAAGAAGACGGCCAAGAAATCCAGAGTGAAGGCCTTCGT CAAGCTCGTGAACTACCAGCACCTGATGCCCACCCGGTACAC
3' Flanking Sequence	CTGGATGTGGATCTCAAGGACGTCGTCAACGTCGAGTCTTTGCAGACCAAGGACAAGAAG GTCACTGCnTTGAAGGAGGTGAAGAAGCGGTTCGAGGAGCGGTTCAAGACCGGGAAAAAC AGGTGGTTCTTCACCAAGCTCAGGTTCTGAGAAAGGAGATTCAACAGCGCCGTATCGGAA ATGGGGTCTGATTTGCCTACTGTGTTTTTTTTCAAGTTAAAGGTTAATTTTGGAATTAAA TGGATGTGACCTCTTCATGGATTTATGGATTAACGTTTAGCTAAACAATTAAATTTTGCT GTTATTGAGATATTTAATT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 283

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	135.54	JPsnpHou00069	View

Sequence

>JPsnpHou00069 ID=JPsnpHou00069; Name=JPsnpHou00069; organism=Pyrus pyrifolia; type=genetic_marker; length=602bp
GAGAGAGAGAGAGCAGAGAGAAACAATGGTGAAGTTTCTGAAGCCAAACA
AGGCGGTGATCAACCTCCAGGGCCGCTACGCCGGGCGTAAGGCCGTCATC
GTGCGCGCCTTCGACGAGGGCACCCGCGATCGTCCCTACGGCCACTGTTT
GGTTGCGGGGATCAAGAAGTACCCCAGCAAGGTCATCCGCAAGGACTCCG
CCAAGAAGACGGCCAAGAAATCCAGAGTGAAGGCCTTCGTCAAGCTCGTG
AACTACCAGCACCTGATGCCCACCCGGTACACkCTGGATGTGGATCTCAA
GGACGTCGTCAACGTCGAGTCTTTGCAGACCAAGGACAAGAAGGTCACTG
CnTTGAAGGAGGTGAAGAAGCGGTTCGAGGAGCGGTTCAAGACCGGGAAA
AACAGGTGGTTCTTCACCAAGCTCAGGTTCTGAGAAAGGAGATTCAACAG
CGCCGTATCGGAAATGGGGTCTGATTTGCCTACTGTGTTTTTTTTCAAGT
TAAAGGTTAATTTTGGAATTAAATGGATGTGACCTCTTCATGGATTTATG
GATTAACGTTTAGCTAAACAATTAAATTTTGCTGTTATTGAGATATTTAA
TT