JPsnpHou00475, JPsnpHou00475 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00475
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGACGAAGTGACTGACAGTGACTACAAAACTTGCACTGTGGGAAATTCAATTACAAGTGA TAGAAGCGGAACCACCACCATCCCCCTCAAGACTGCCGGGACTCATAACTACATTTGTGG CACGGTTGGGCATTGTACAATGGGGATGAAGCTTTCTGTGACTGTAGCGnCnGGATCAAC CGCAGnAnCATCCGGCAACGGTAAATCAACATCCGGTGGTTCCGACGGTAACTCTACAGT TACCACCCCTGCAAGTACCACCAAACCCTCATCAACT
3' Flanking Sequence	GTGATGGGAGTAGCCACTCTAGCTCTCTTGTTGTGACTTTGTGGAGTGTGATTAGTTTGG TTGGTTTTTGTATGTTCCTTCTAATTTAAGTTTGGCAGCTGATGAGATGATATCACTCCA AGTGCCAGGATAGAGGCAGTGCTAGTTTnTTTCTTCTTGTTTAAATTTTAGGGTATTTTA AGTACTCTTGAGTTTCTGGGGTCCATGATACATTATTTGTGTAGCATGATTGAGGTTCAT ATATATTATGCACTTTGCTTTTGAAAGGAAAAAAAAAAAAAAAANAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 278

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	129.26	JPsnpHou00475	View

Sequence

>JPsnpHou00475 ID=JPsnpHou00475; Name=JPsnpHou00475; organism=Pyrus pyrifolia; type=genetic_marker; length=569bp
GGACGAAGTGACTGACAGTGACTACAAAACTTGCACTGTGGGAAATTCAA
TTACAAGTGATAGAAGCGGAACCACCACCATCCCCCTCAAGACTGCCGGG
ACTCATAACTACATTTGTGGCACGGTTGGGCATTGTACAATGGGGATGAA
GCTTTCTGTGACTGTAGCGnCnGGATCAACCGCAGnAnCATCCGGCAACG
GTAAATCAACATCCGGTGGTTCCGACGGTAACTCTACAGTTACCACCCCT
GCAAGTACCACCAAACCCTCATCAACTrGTGATGGGAGTAGCCACTCTAG
CTCTCTTGTTGTGACTTTGTGGAGTGTGATTAGTTTGGTTGGTTTTTGTA
TGTTCCTTCTAATTTAAGTTTGGCAGCTGATGAGATGATATCACTCCAAG
TGCCAGGATAGAGGCAGTGCTAGTTTnTTTCTTCTTGTTTAAATTTTAGG
GTATTTTAAGTACTCTTGAGTTTCTGGGGTCCATGATACATTATTTGTGT
AGCATGATTGAGGTTCATATATATTATGCACTTTGCTTTTGAAAGGAAAA
AAAAAAAAAAAANAAAAAA