JPsnpHou00094, JPsnpHou00094 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00094
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGTCGGATTCGACGGGTTGAAGGT GGATCTGATCATCACGGATTACTGTATGCCCGGAATGACCGGCTACGAATTGCTCAAGAA AATAAAAGAATCTTCCACATTCAAAGAGGTTCCCGTCGTGATTATGTCATCCGAGAACGT TTTGGCGCGCATAGACAGGTGTTTGGAAGAAGGCGCGGAGGACTTCATAGTGAAACCGGT GAAGTTAGCGGACGTCAAGAGGCTGAAGGATTA
3' Flanking Sequence	ATGACGACCGCGAGGGATGTCGGAGTGGAGGAGAGCGGCGGAGGAATGAACAAGAGAAAG CTACGGGAGCCGTGTGATCTGATGATGCCCACATCACCGCCTTCCATTTTACCGTCGTCT CCTTTGTCGTCCTTATCGTCGCCGTCTAAATCTCCGTCGCCTCCTATGTCATCCTCGTTC TCGGCTCCATCGTCGCCCACGTCGCTTGATTCTCCGATCCGACGGTTCAAAATGACCAAC GCTGATTAGATCAATCGGACCCGATTGTACCGCAATCGCGCTTTTTTTTTTCGGGGCTAA ACTGCAATTACCCGTTTAAACGGTTTTTGATGAATTACTTTCCTTTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 274

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	41.99	JPsnpHou00094	View

Sequence

>JPsnpHou00094 ID=JPsnpHou00094; Name=JPsnpHou00094; organism=Pyrus pyrifolia; type=genetic_marker; length=622bp
GCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGTCGGATTCGACG
GGTTGAAGGTGGATCTGATCATCACGGATTACTGTATGCCCGGAATGACC
GGCTACGAATTGCTCAAGAAAATAAAAGAATCTTCCACATTCAAAGAGGT
TCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACAGGT
GTTTGGAAGAAGGCGCGGAGGACTTCATAGTGAAACCGGTGAAGTTAGCG
GACGTCAAGAGGCTGAAGGATTAyATGACGACCGCGAGGGATGTCGGAGT
GGAGGAGAGCGGCGGAGGAATGAACAAGAGAAAGCTACGGGAGCCGTGTG
ATCTGATGATGCCCACATCACCGCCTTCCATTTTACCGTCGTCTCCTTTG
TCGTCCTTATCGTCGCCGTCTAAATCTCCGTCGCCTCCTATGTCATCCTC
GTTCTCGGCTCCATCGTCGCCCACGTCGCTTGATTCTCCGATCCGACGGT
TCAAAATGACCAACGCTGATTAGATCAATCGGACCCGATTGTACCGCAAT
CGCGCTTTTTTTTTTCGGGGCTAAACTGCAATTACCCGTTTAAACGGTTT
TTGATGAATTACTTTCCTTTTT