JPsnpHou00617, JPsnpHou00617 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00617
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GACGAATATAATTAAGGAAATAATTAAATCTCGTTAATCAGCTAGCCATGGCGGCCATCT CGACCTCATCAAGGGTTGTGATTGTTTCACTACTCGTTTCCCTTCTTGTTCTCACACCCG TCGAAGCTGATGAGACGGTAAACAACAATCCAGAACAGACTTCTCTCCTCAAGAAAATAG ACTGTGGCGGAGCATGCAGTGCTCGATGTCGTTTATCATCGAGGCCTCATCTGTGCAAGA GGGCATGCGGGACTTGCTGCCAGCGTTG
3' Flanking Sequence	AGCTGTGTTCCACCGGGTACCGCCGGCAATCTTGAGACCTGCCCGTGTTACGCCACCCTC ACCACCCACGGCGGCAGACGCAAGTGTCCTTAAAACAATCCTCTATCTTGAAACTCAAAC AAACGTGCTCATATGGGGCATGCAGGTGCTGTATATATGGGAATTGAAGGTGTTCATGCC TTCAGATGAATAAATAGTATGTTTCGAAATAAATAAAAATGTCACTGTGTGTTATTAAAG CTAnAGAAATTGCTTGTAAGTATGTTATTTTTTTCTACTTCTTCAAATATGACTCTTCCA TTTCGAAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 269

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	33.55	JPsnpHou00617	View

Sequence

>JPsnpHou00617 ID=JPsnpHou00617; Name=JPsnpHou00617; organism=Pyrus pyrifolia; type=genetic_marker; length=577bp
GACGAATATAATTAAGGAAATAATTAAATCTCGTTAATCAGCTAGCCATG
GCGGCCATCTCGACCTCATCAAGGGTTGTGATTGTTTCACTACTCGTTTC
CCTTCTTGTTCTCACACCCGTCGAAGCTGATGAGACGGTAAACAACAATC
CAGAACAGACTTCTCTCCTCAAGAAAATAGACTGTGGCGGAGCATGCAGT
GCTCGATGTCGTTTATCATCGAGGCCTCATCTGTGCAAGAGGGCATGCGG
GACTTGCTGCCAGCGTTGyAGCTGTGTTCCACCGGGTACCGCCGGCAATC
TTGAGACCTGCCCGTGTTACGCCACCCTCACCACCCACGGCGGCAGACGC
AAGTGTCCTTAAAACAATCCTCTATCTTGAAACTCAAACAAACGTGCTCA
TATGGGGCATGCAGGTGCTGTATATATGGGAATTGAAGGTGTTCATGCCT
TCAGATGAATAAATAGTATGTTTCGAAATAAATAAAAATGTCACTGTGTG
TTATTAAAGCTAnAGAAATTGCTTGTAAGTATGTTATTTTTTTCTACTTC
TTCAAATATGACTCTTCCATTTCGAAT