JPsnpHou00458, JPsnpHou00458 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00458
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAACTCTACATGTTTAAATGGACAACACTTCTGATCCCGCCAACAACTCTCCTCATCGTA AACTTGGTAGGGGTTGTAGCAGGTATATCGTATGCTATCAATAGCGGATACCAATCATGG GGTCCCCTCTTTGGTAAGCTCTTCTTTGCCTTTTGGGTGATTGTCCATTTGTACCCCTTC CTCAAAGGTCTCATGGGACGTCAGAACCGTACGCCCACCATTGTCATCGTGTGGTCGATT CTCCTTGCTTCAATTTTCTCTTTGTT
3' Flanking Sequence	TGGGTGAGGGTTGATCCCTTCACCACAAGAGTCACCGGACCAAATATTGACGAGTGTGGA ATCAACTGCTAGACAGAAAGACGACAATGnTACTGTCCGAAAATTCACATTCAAATTTAT TTGGTTTGTTTGCCCAACTAAAGCTCGAGAGGTGGGAGTTTCTTATATTTTGATTTGATA TTTGTTTCTGTCAACTGGTTTGTCCATTTGCAGCTTACACTGTTTGTAGATGATAGGAGG TGAAAGAAGAATATGTTTTGTTGTAATGTAAAAGGGGTGAATTTCATGTAATATTTGAAC ATAACTAGCCAACTTATTTATGAGAGATCTCAAGACTCTTAAAACTTTCAAGAAAAAAAA AAAAAAACCGACCTCCCAACGGACACACAAGGGGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 267

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	160.34	JPsnpHou00458	View

Sequence

>JPsnpHou00458 ID=JPsnpHou00458; Name=JPsnpHou00458; organism=Pyrus pyrifolia; type=genetic_marker; length=662bp
GAACTCTACATGTTTAAATGGACAACACTTCTGATCCCGCCAACAACTCT
CCTCATCGTAAACTTGGTAGGGGTTGTAGCAGGTATATCGTATGCTATCA
ATAGCGGATACCAATCATGGGGTCCCCTCTTTGGTAAGCTCTTCTTTGCC
TTTTGGGTGATTGTCCATTTGTACCCCTTCCTCAAAGGTCTCATGGGACG
TCAGAACCGTACGCCCACCATTGTCATCGTGTGGTCGATTCTCCTTGCTT
CAATTTTCTCTTTGTTrTGGGTGAGGGTTGATCCCTTCACCACAAGAGTC
ACCGGACCAAATATTGACGAGTGTGGAATCAACTGCTAGACAGAAAGACG
ACAATGnTACTGTCCGAAAATTCACATTCAAATTTATTTGGTTTGTTTGC
CCAACTAAAGCTCGAGAGGTGGGAGTTTCTTATATTTTGATTTGATATTT
GTTTCTGTCAACTGGTTTGTCCATTTGCAGCTTACACTGTTTGTAGATGA
TAGGAGGTGAAAGAAGAATATGTTTTGTTGTAATGTAAAAGGGGTGAATT
TCATGTAATATTTGAACATAACTAGCCAACTTATTTATGAGAGATCTCAA
GACTCTTAAAACTTTCAAGAAAAAAAAAAAAAAACCGACCTCCCAACGGA
CACACAAGGGGA