JPsnpHou00583, JPsnpHou00583 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00583
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	CGGTGAGGAGGATACGGAGAGAGTTGTGGCAACGGAAGGCAAAAATGTTGGTTTAGAGGA GAAGGTGAAGAACGTGAGCTTAACTCAGGATTTGAAATTTTTGGACAAAATATGGAGGTC AGGGTTTGAAGAAAAAAGAGAGCTTGCAAGTCAAGAAATGTATCTTGCAAAGGGGCTTGG GGTTGGTGGTGGTGGCAGCGGTAGGCGCGGTGGCGGAGAGGTTAAGTGGGATGGCTATGG TAGTGATGGAGGAGATGACAACCG
3' Flanking Sequence	GGGGCTGAGGGGCATTACAAGAAGCTGGTTGAGGAAAATCCAGGAAGCCCTTTGTTCCTT GGAAATTACGCTCAATTTTTGTATCAGACCAAGAGAGATCTTCAGAGAGCAGAGGAGTAC TACTCTAGAGCCATCCTAGCAGATCCTAATGATGGTGAAGTTATGGCTCAATATGCTAAG CTAATATGGGAGCTGCACCATGACCAAGATAGAGCCTTGAGCTACTACGAACGAGCAGTC CAAGCTGCACCTCAAGACAGCCATGTCCACGCAGCATATGCCAATTTTCTCTGGGAAGTA GAGGAAGACGAGGACGAAGCCGATGCAGAGTACAATCACCGCGCCGTGCCATTGTATCTT CACGAAGGAATCATGGCCTAAAATTGTTTGCTAGCGTTGTAATGGTGACTAGGTTGCCAA CAAGAATGGTCACGACCTATGTATAAACATTTTTCACATTTTTCTGAGATGAATGGTTGT CCTACTCAAAAAAAAAAAACTAAGAACTAGCCAAGACGACACAGGGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 265

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	118.68	JPsnpHou00583	View

Sequence

>JPsnpHou00583 ID=JPsnpHou00583; Name=JPsnpHou00583; organism=Pyrus pyrifolia; type=genetic_marker; length=792bp
CGGTGAGGAGGATACGGAGAGAGTTGTGGCAACGGAAGGCAAAAATGTTG
GTTTAGAGGAGAAGGTGAAGAACGTGAGCTTAACTCAGGATTTGAAATTT
TTGGACAAAATATGGAGGTCAGGGTTTGAAGAAAAAAGAGAGCTTGCAAG
TCAAGAAATGTATCTTGCAAAGGGGCTTGGGGTTGGTGGTGGTGGCAGCG
GTAGGCGCGGTGGCGGAGAGGTTAAGTGGGATGGCTATGGTAGTGATGGA
GGAGATGACAACCGwGGGGCTGAGGGGCATTACAAGAAGCTGGTTGAGGA
AAATCCAGGAAGCCCTTTGTTCCTTGGAAATTACGCTCAATTTTTGTATC
AGACCAAGAGAGATCTTCAGAGAGCAGAGGAGTACTACTCTAGAGCCATC
CTAGCAGATCCTAATGATGGTGAAGTTATGGCTCAATATGCTAAGCTAAT
ATGGGAGCTGCACCATGACCAAGATAGAGCCTTGAGCTACTACGAACGAG
CAGTCCAAGCTGCACCTCAAGACAGCCATGTCCACGCAGCATATGCCAAT
TTTCTCTGGGAAGTAGAGGAAGACGAGGACGAAGCCGATGCAGAGTACAA
TCACCGCGCCGTGCCATTGTATCTTCACGAAGGAATCATGGCCTAAAATT
GTTTGCTAGCGTTGTAATGGTGACTAGGTTGCCAACAAGAATGGTCACGA
CCTATGTATAAACATTTTTCACATTTTTCTGAGATGAATGGTTGTCCTAC
TCAAAAAAAAAAAACTAAGAACTAGCCAAGACGACACAGGGA