JPsnpHou00234, JPsnpHou00234 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00234
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAGAAATCAAGCTGCCCCGGGGGCATGGTGCTCGGGCTGGAAAAGCTGGTGGATGGATCC GTGCACTCATTGGGGTGATGCCAATATCTTGAAGCCTGGGCCCCAAGCAAAGAAGTTTGA AGAGTCGATCACTAACCTTCTTGATGACTGGAATGCACAATCAAATCAATGCCAATGACG ATGTCTGTGCTGAAAATGTCTCCAGATACCCGGTATGGTTTTCCTGTGAGCTAAACTTGA TTAGTTTAGAAGACTGGCAACCGC
3' Flanking Sequence	GAGATATATTCTTTGGCCCCTAAGAACACTTTTCGTTTTGTGGGTTCGTCCAGTCTCATG CTTGACTATTGTTTATAACGGGGCGTCGGGGCAGAGTAGAAGGGAGAAACATAGTGAGTT AGCTTGAGGTATTGCCACTTACCGTAGCATGGCGGGCTGTTACCGATGGTATTGCCACTC GTAGCTTTTGAGTAACTGAGTTAATAAGAGGCTCTCCCTCTTTTTGTGCTGCCATTCCAT GCTCTTGTATGTCTACTTCGATTCGGTTTACATTCGGACATGTTTGAATGTTGGATCACA AATTCATTCTTTCACCTCTGATCTGTTGTATCTTGTTCTAAATTCATAGTGAATCTCTCC CCCTCTGGTTTCGAACTCGCCCCTTCATGATATTTGAATTTAAGACCGCGCGCTCACCAC GAGATTCGAACTCACCCATCACTTGTAATGTGTATG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 265

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	21.47	JPsnpHou00234	View

Sequence

>JPsnpHou00234 ID=JPsnpHou00234; Name=JPsnpHou00234; organism=Pyrus pyrifolia; type=genetic_marker; length=721bp
GAGAAATCAAGCTGCCCCGGGGGCATGGTGCTCGGGCTGGAAAAGCTGGT
GGATGGATCCGTGCACTCATTGGGGTGATGCCAATATCTTGAAGCCTGGG
CCCCAAGCAAAGAAGTTTGAAGAGTCGATCACTAACCTTCTTGATGACTG
GAATGCACAATCAAATCAATGCCAATGACGATGTCTGTGCTGAAAATGTC
TCCAGATACCCGGTATGGTTTTCCTGTGAGCTAAACTTGATTAGTTTAGA
AGACTGGCAACCGCrGAGATATATTCTTTGGCCCCTAAGAACACTTTTCG
TTTTGTGGGTTCGTCCAGTCTCATGCTTGACTATTGTTTATAACGGGGCG
TCGGGGCAGAGTAGAAGGGAGAAACATAGTGAGTTAGCTTGAGGTATTGC
CACTTACCGTAGCATGGCGGGCTGTTACCGATGGTATTGCCACTCGTAGC
TTTTGAGTAACTGAGTTAATAAGAGGCTCTCCCTCTTTTTGTGCTGCCAT
TCCATGCTCTTGTATGTCTACTTCGATTCGGTTTACATTCGGACATGTTT
GAATGTTGGATCACAAATTCATTCTTTCACCTCTGATCTGTTGTATCTTG
TTCTAAATTCATAGTGAATCTCTCCCCCTCTGGTTTCGAACTCGCCCCTT
CATGATATTTGAATTTAAGACCGCGCGCTCACCACGAGATTCGAACTCAC
CCATCACTTGTAATGTGTATG