JPsnpHou00397, JPsnpHou00397 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00397
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	AGGCATTGTCCCCCCACTGATGAGTTTGCTCAAGGATGCGGGAAGTGGGATGGTGGATGA AGCACTAGCGATCCTGGCCATTCTAGCTAGCCACCAAGAAGGGAAGGCAGCAATTGCCCA AGCTGAGCCAATCCCGGTCTTGGTGGAAGTTATAAGAACCGGCTTCCCACGCAACCGGGA GAATGCTTCTGCTGTATTATGGTCGTTATGCACAGGCGATTTGCAGCAGTTGAAACTAGC AAGGGAACTCGGCGCAGAAGAGG
3' Flanking Sequence	AATGAAGGAACTGTCGGAAAGTGGCACTGATAGGGCCAAGAGAAAAGCTTTAGGCGTTTT GGAGCTCTnTCAACAAGTCGACGATGATTTTGTTCCCCAACAATCCTAGTACGTATTATT AGGATGGAGAAAGTGTAnTTTTACGCGTACTATACGACGTATGCATTATATTGTGGTGGT GACATATTGGTGTTTCTTGTAGAAGGGGATAAGTAGAGTAATATAAAAGAAGGCAGGAAT GCAATTCAATGTGGCCGGCTTTTCCACAATAGTAAAACAAATTTATCAACTTAACTGGAA CTCCAAATTGAGTATTTTATTTGTGAAAACAAAAAAAAAAAANAAAACTAGANATCACGA AGACACAGAGGAGTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 264

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	86.97	JPsnpHou00397	View

Sequence

>JPsnpHou00397 ID=JPsnpHou00397; Name=JPsnpHou00397; organism=Pyrus pyrifolia; type=genetic_marker; length=640bp
AGGCATTGTCCCCCCACTGATGAGTTTGCTCAAGGATGCGGGAAGTGGGA
TGGTGGATGAAGCACTAGCGATCCTGGCCATTCTAGCTAGCCACCAAGAA
GGGAAGGCAGCAATTGCCCAAGCTGAGCCAATCCCGGTCTTGGTGGAAGT
TATAAGAACCGGCTTCCCACGCAACCGGGAGAATGCTTCTGCTGTATTAT
GGTCGTTATGCACAGGCGATTTGCAGCAGTTGAAACTAGCAAGGGAACTC
GGCGCAGAAGAGGyAATGAAGGAACTGTCGGAAAGTGGCACTGATAGGGC
CAAGAGAAAAGCTTTAGGCGTTTTGGAGCTCTnTCAACAAGTCGACGATG
ATTTTGTTCCCCAACAATCCTAGTACGTATTATTAGGATGGAGAAAGTGT
AnTTTTACGCGTACTATACGACGTATGCATTATATTGTGGTGGTGACATA
TTGGTGTTTCTTGTAGAAGGGGATAAGTAGAGTAATATAAAAGAAGGCAG
GAATGCAATTCAATGTGGCCGGCTTTTCCACAATAGTAAAACAAATTTAT
CAACTTAACTGGAACTCCAAATTGAGTATTTTATTTGTGAAAACAAAAAA
AAAAAANAAAACTAGANATCACGAAGACACAGAGGAGTAG