JPsnpHou00332, JPsnpHou00332 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00332
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	AACAACTAACTGTTAGGATCCAAAATGCTGGAACTGAGGTTGTAGAGGCAAAGGCAGGTG CTGGGTCCGCGACATTGTCAATGGCATATGCAGCAGCCAGATTTGTTGAGTCATCTCTGC GGGCACTGGACGGAGATGGGGATGTCTATGAGTGCTCTTATGTAGCATCTGATCTGACCG AGCTTCCATTCTTTGCATCAAGGGTTAAGCTTGGAAGGAACGGAATTGAAGCTTTCATAC CGTCTGACCTCCAAGGTTTGACA
3' Flanking Sequence	AGTATGAGCAAAAGGCTTTGGAAGCACTCAAGCCGGAACTGAAAGCCAGCATTGAGAAGG GTATTGCTTTTGCCAACAAGCAGACCGCGACTGCTTAGGCCGCTATTATCAGAAGCTTCT ATTACCTCATTCCAGTGAATGCTTTACAGATATTTTTATGCGGATTTAGCATTACATCAG TACTTTCAGTTTTGTAGAATGAAGTCGATATCCTTTCAGCGATCTATATTGAAGTGATTT TCGGAAGAAATATAGAGTTGCTTCTGTTGTTGTAGATTGAAGAATATTAGCCTTCTCTTG CGGAAACTTGTAGTGACAGTTTTGAAAAAAACTTGGCTGGTCGATCATGAGTTTTTAGGA ATATCATGTATTTCTATCATGCGTGTTGCAAGGGTTAGTTTCCGATGCAGCAAATAAATT CGAAAGAATGTGAATCCGTAACTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 264

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	141.95	JPsnpHou00332	View

Sequence

>JPsnpHou00332 ID=JPsnpHou00332; Name=JPsnpHou00332; organism=Pyrus pyrifolia; type=genetic_marker; length=708bp
AACAACTAACTGTTAGGATCCAAAATGCTGGAACTGAGGTTGTAGAGGCA
AAGGCAGGTGCTGGGTCCGCGACATTGTCAATGGCATATGCAGCAGCCAG
ATTTGTTGAGTCATCTCTGCGGGCACTGGACGGAGATGGGGATGTCTATG
AGTGCTCTTATGTAGCATCTGATCTGACCGAGCTTCCATTCTTTGCATCA
AGGGTTAAGCTTGGAAGGAACGGAATTGAAGCTTTCATACCGTCTGACCT
CCAAGGTTTGACAsAGTATGAGCAAAAGGCTTTGGAAGCACTCAAGCCGG
AACTGAAAGCCAGCATTGAGAAGGGTATTGCTTTTGCCAACAAGCAGACC
GCGACTGCTTAGGCCGCTATTATCAGAAGCTTCTATTACCTCATTCCAGT
GAATGCTTTACAGATATTTTTATGCGGATTTAGCATTACATCAGTACTTT
CAGTTTTGTAGAATGAAGTCGATATCCTTTCAGCGATCTATATTGAAGTG
ATTTTCGGAAGAAATATAGAGTTGCTTCTGTTGTTGTAGATTGAAGAATA
TTAGCCTTCTCTTGCGGAAACTTGTAGTGACAGTTTTGAAAAAAACTTGG
CTGGTCGATCATGAGTTTTTAGGAATATCATGTATTTCTATCATGCGTGT
TGCAAGGGTTAGTTTCCGATGCAGCAAATAAATTCGAAAGAATGTGAATC
CGTAACTT