JPsnpHou00364, JPsnpHou00364 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00364
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TGATACTGCAGAGGCAGCGAAGGAAAAGGCTTATGAGGCGGCGAAGGCGGCTAAGGAAAA GACTTTTGGTACGGTGGGTGAAGCTAAGGAGAAGGCTGATGAGGCCACAAAGACGGCGAC GGACAAGACTTCTGATACGGCGGGTGCAGCGAAGGAGAAGGCATACGAGGCCACAAAGGC GGCAAAAGACAAGACATATCAAACCAAGAATGCAGCTGAGGAGGCTACAAAGGCGGCGAA AGACAAAACGTATGAG
3' Flanking Sequence	CGAAGAACGCAGCTGAGGAGACGGCCCGAATAACAGCAGAGAAAGCGAATGAGGCTACCG GTTACGCGGCAGAGAAAGCAAGAGAAGCGAAAGAAAAAGCAGCGCAAACGGCAGAGGAGG TGAAGAACAAGGCTTATGAGAAAGCAGAGGAGACTAAAGAGGCAAAGGAGAAGGCAAAGG AGAAGTCCCAGAAGATTAAGGACGAAGTTGCTGGCCGCGGCCGTGACGAGGAGCTCTGAG TGCTAGCTGCTCCATTTGTTGTTGCATCGTCTGATGTTACGAGTCGGCTTTTGTTGTTGT ATGGAAGTTTTGTTTGGCGTCTTGTTGTGTAATGCTCTGATTGTGCTGTTGTATTTAACG ATGTAACGCAAGTTTGCTTGGAAATATGGCTAGATAATATTTCGAACTTGAACATCTGGG ATTTGTTGTCTGGACAGTATTCTTCGGCCAATCCTTCTCGGATTATTGTGATACCGGCCC AAATGTGATCATCAATGGACTTTAGTAAGATTACTAACAAAAAAAAAAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 257

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	86.33	JPsnpHou00364	View

Sequence

>JPsnpHou00364 ID=JPsnpHou00364; Name=JPsnpHou00364; organism=Pyrus pyrifolia; type=genetic_marker; length=787bp
TGATACTGCAGAGGCAGCGAAGGAAAAGGCTTATGAGGCGGCGAAGGCGG
CTAAGGAAAAGACTTTTGGTACGGTGGGTGAAGCTAAGGAGAAGGCTGAT
GAGGCCACAAAGACGGCGACGGACAAGACTTCTGATACGGCGGGTGCAGC
GAAGGAGAAGGCATACGAGGCCACAAAGGCGGCAAAAGACAAGACATATC
AAACCAAGAATGCAGCTGAGGAGGCTACAAAGGCGGCGAAAGACAAAACG
TATGAGrCGAAGAACGCAGCTGAGGAGACGGCCCGAATAACAGCAGAGAA
AGCGAATGAGGCTACCGGTTACGCGGCAGAGAAAGCAAGAGAAGCGAAAG
AAAAAGCAGCGCAAACGGCAGAGGAGGTGAAGAACAAGGCTTATGAGAAA
GCAGAGGAGACTAAAGAGGCAAAGGAGAAGGCAAAGGAGAAGTCCCAGAA
GATTAAGGACGAAGTTGCTGGCCGCGGCCGTGACGAGGAGCTCTGAGTGC
TAGCTGCTCCATTTGTTGTTGCATCGTCTGATGTTACGAGTCGGCTTTTG
TTGTTGTATGGAAGTTTTGTTTGGCGTCTTGTTGTGTAATGCTCTGATTG
TGCTGTTGTATTTAACGATGTAACGCAAGTTTGCTTGGAAATATGGCTAG
ATAATATTTCGAACTTGAACATCTGGGATTTGTTGTCTGGACAGTATTCT
TCGGCCAATCCTTCTCGGATTATTGTGATACCGGCCCAAATGTGATCATC
AATGGACTTTAGTAAGATTACTAACAAAAAAAAAAAC