JPsnpHou00353, JPsnpHou00353 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00353
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAAGTGGGGAGGTGCCATAGAGCTATCTATATTAGCAGATTATTATGGACGTGAAATTGC AGCGTATGATATCCAGACTACACGTTGTGATTTGTATGGTCAGGAGAAGAGGTATTCCGA AAGGGTTATGTTGATCTATGATGGACTTCATTACGATGCTTTAGCTATGTCTCCCTTCGA GGGAGCTCCAGAGGAGTTTGATCAGACAATATTTGCAGTCCATAACGGTTCCGTTGGGCC AGTTGAGGGGCTC
3' Flanking Sequence	CTCTTAACCTTGTCAAAGAGCAACAAAGTAAGAGGAGATACACGGACACTGCCAACTTCA CTTTGCGCTGTGGGGTGTGCCAACTTGGACTAATCGGCCAGAAGGAGGCTGTGGAGCATG CACGGGCGACAGGGCATGTCAACTTTCAAGAATACAGATAACAGAATCGCTATCCACTCA TTTGTTTCATGCTGTGTCAAATAAGTACAACGTTGGACTGTCGAAAGGCCACCGTGTGAT AATATTCAGTCTCGAAATGTTGTATCGTAGTACTGTACCGTCAAAAGGAAGAAAAACAAG GAAAACTAGACTTGTAGTGGGTTGCCCATATCATTTTATGGGGTCTCATGCAACCTGTTG TATCAGCCATTACCCTCCTTTATTTATTATTCGAGTCTTCTTCAATTTTAAAAAAAAAAA AAAAAANAAAAAAAAACCGAAGACTAGCCAAGGACACACAGGGGATAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 254

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	136.94	JPsnpHou00353	View

Sequence

>JPsnpHou00353 ID=JPsnpHou00353; Name=JPsnpHou00353; organism=Pyrus pyrifolia; type=genetic_marker; length=723bp
GAAGTGGGGAGGTGCCATAGAGCTATCTATATTAGCAGATTATTATGGAC
GTGAAATTGCAGCGTATGATATCCAGACTACACGTTGTGATTTGTATGGT
CAGGAGAAGAGGTATTCCGAAAGGGTTATGTTGATCTATGATGGACTTCA
TTACGATGCTTTAGCTATGTCTCCCTTCGAGGGAGCTCCAGAGGAGTTTG
ATCAGACAATATTTGCAGTCCATAACGGTTCCGTTGGGCCAGTTGAGGGG
CTCrCTCTTAACCTTGTCAAAGAGCAACAAAGTAAGAGGAGATACACGGA
CACTGCCAACTTCACTTTGCGCTGTGGGGTGTGCCAACTTGGACTAATCG
GCCAGAAGGAGGCTGTGGAGCATGCACGGGCGACAGGGCATGTCAACTTT
CAAGAATACAGATAACAGAATCGCTATCCACTCATTTGTTTCATGCTGTG
TCAAATAAGTACAACGTTGGACTGTCGAAAGGCCACCGTGTGATAATATT
CAGTCTCGAAATGTTGTATCGTAGTACTGTACCGTCAAAAGGAAGAAAAA
CAAGGAAAACTAGACTTGTAGTGGGTTGCCCATATCATTTTATGGGGTCT
CATGCAACCTGTTGTATCAGCCATTACCCTCCTTTATTTATTATTCGAGT
CTTCTTCAATTTTAAAAAAAAAAAAAAAAANAAAAAAAAACCGAAGACTA
GCCAAGGACACACAGGGGATAGG