JPsnpHou00271, JPsnpHou00271 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00271
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGAGCTGGCAAGCTTATTGTGGGGTTCACGCCACACAGGCCCAACCTACACTCTGGAGAT GTGCATGACCGGTCTAGACAGGAAGAGGGCTTCTGTGTTTTACAAATCCGACGCAAGTTC AGCTGCTGGAATGACAGAAGAATCTGGCATCAGGAAGATCCTCCCACAATCCGATATATG CGACTTTGAGTTCGAACCTTGCGGTTACTCCATGAACTCAATTGAAGGCAATGCAGTTTC TACGATCCA
3' Flanking Sequence	GTGACACCAGAAGACGGTTTCAGCTACGCTAGCTTTGAAACGGTGGGATATAATTTCAAT GATGTGAACTTGACCCAGCTGCTTTACAGGGTTCTGGATTGCTTCAAACCAGCTGAGTTC TCCATAGCCTTGCACACCACCAGCACCGCAGGTGAAGATCTTGATGCTAAGGGCCCTCTG GACTTAAAAGGATACTGCTGCGGAGGAAGCAGCTGTGAGGGTCTAGGCCTGGGTGGTGCA GTCGTCTACCACAGCTTTGTCAAGGATAATTCTGGTTCGCAGTCTCCAAGGTCGATTCTG AAGTGCTGCTGGAGCGAGGACGAGAAGGACGAGAAGGACGAGGAAGTTGAAGAGATAGAT CTGGCCGAGATCTAGTGTTCTATTGTTCGTGTTTTTAGTAGTAATAAATAAAAGAAAAAC AAATAGTGACTGGGGGTATGGTGCAATTATAGTAGGGTATTAGTATG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 250

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	26.7	JPsnpHou00271	View

Sequence

>JPsnpHou00271 ID=JPsnpHou00271; Name=JPsnpHou00271; organism=Pyrus pyrifolia; type=genetic_marker; length=717bp
GGAGCTGGCAAGCTTATTGTGGGGTTCACGCCACACAGGCCCAACCTACA
CTCTGGAGATGTGCATGACCGGTCTAGACAGGAAGAGGGCTTCTGTGTTT
TACAAATCCGACGCAAGTTCAGCTGCTGGAATGACAGAAGAATCTGGCAT
CAGGAAGATCCTCCCACAATCCGATATATGCGACTTTGAGTTCGAACCTT
GCGGTTACTCCATGAACTCAATTGAAGGCAATGCAGTTTCTACGATCCAy
GTGACACCAGAAGACGGTTTCAGCTACGCTAGCTTTGAAACGGTGGGATA
TAATTTCAATGATGTGAACTTGACCCAGCTGCTTTACAGGGTTCTGGATT
GCTTCAAACCAGCTGAGTTCTCCATAGCCTTGCACACCACCAGCACCGCA
GGTGAAGATCTTGATGCTAAGGGCCCTCTGGACTTAAAAGGATACTGCTG
CGGAGGAAGCAGCTGTGAGGGTCTAGGCCTGGGTGGTGCAGTCGTCTACC
ACAGCTTTGTCAAGGATAATTCTGGTTCGCAGTCTCCAAGGTCGATTCTG
AAGTGCTGCTGGAGCGAGGACGAGAAGGACGAGAAGGACGAGGAAGTTGA
AGAGATAGATCTGGCCGAGATCTAGTGTTCTATTGTTCGTGTTTTTAGTA
GTAATAAATAAAAGAAAAACAAATAGTGACTGGGGGTATGGTGCAATTAT
AGTAGGGTATTAGTATG